1 HisKA#1
163-227 aa · 65 aa · 15.0% of protein
Raw token
HisKA:163:0.0000000000000106:227:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JK_RS09760
Histidine kinase, Classic
Corynebacterium jeikeium K411 · GCF_000006605
ClassHKTypeClassicLength432 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000006605#JK_RS09760Stable P2CS identifier used across views.
GenomeGCF_000006605Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length432 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 432 aa (40.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa432 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
274-383 aa · 110 aa · 25.5% of protein
Raw token
HATPase_c:274:4.43e-30:383:110:109- Raw architecture: HisKA:163:0.0000000000000106:227:65:64#HATPase_c:274:4.43e-30:383:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000006605::NC_007164.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2225815-2227952Genomic interval covered by the local TCS group.
Identifiers
Old locus tagjk1911RefSeq proteinWP_011274216.1
Context group ID
GCF_000006605::NC_007164.1::G00009Context members
JK_RS09755JK_RS09760
Partner locus tags
JK_RS09755JK_RS09760
Partner old locus tags
jk1910jk1911
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_011274216.1Primary protein accession used for annex mappings.
UniProt accessionQ4JSW5Primary UniProt accession resolved in the annex database.
UniProt IDQ4JSW5_CORJKDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJK_RS09760Primary locus identifier stored in the genes table.
Old locus tagjk1911Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_007164.1Sequence record reported by the local genomic context database.
Genomic interval2 226 654-2 227 952 nt1 299 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 225 815-2 227 952 ntGCF_000006605::NC_007164.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006605::NC_007164.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_007164.1All displayed genes belong to this local TCS context.
Neighborhood span2 225 815-2 227 952 nt2 138 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 225 815 nt2 227 952 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JK_RS09755GCF_000006605#JK_RS09755
RROmpR
2 225 815-2 226 507 nt · Reverse (-)
JK_RS09760GCF_000006605#JK_RS09760
HKClassicCurrent focus
2 226 654-2 227 952 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006605#JK_RS09760The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2151500
Simplified PFAM architecture for HKOC_2151500
PFAM domain coverage: 175 / 432 aa (40.5%)
1 aa432 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[163-227] | HATPase_c[275-384]
- Domain count: 2
- Matched identifier: HKOC_2151500
- Positioned domains: HisKA 163-227 ; HATPase_c 275-384
Cluster members and taxonomy
Representative gene: GCF_000006605#JK_RS09760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 306 537 · GCF_000006605
AssemblyASM660v1 · Complete Genomehaploid
Genome composition2 476 822 bp · 61,5% GCCorynebacterium jeikeium K411
Signal transduction countsGenes 18 · HK 9 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderMycobacterialesFamilyCorynebacteriaceaeGenusCorynebacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Mycobacteriales6Corynebacteriaceae7Corynebacterium
Related genes
Preview from the same derived genome key