1 Response_reg#1
11-121 aa · 111 aa · 47.2% of protein
Raw token
Response_reg:11:2.24e-35:121:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JK_RS01740
Response regulator OmpR family
Corynebacterium jeikeium K411 · GCF_000006605
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000006605#JK_RS01740Stable P2CS identifier used across views.
GenomeGCF_000006605Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 235 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-230 aa · 75 aa · 31.9% of protein
Raw token
Trans_reg_C:156:3.69e-32:230:77:77- Raw architecture: Response_reg:11:2.24e-35:121:111:111#Trans_reg_C:156:3.69e-32:230:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000006605::NC_007164.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span410007-412337Genomic interval covered by the local TCS group.
Identifiers
Old locus tagjk0341RefSeq proteinWP_005296686.1
Context group ID
GCF_000006605::NC_007164.1::G00001Context members
JK_RS01740JK_RS01745
Partner locus tags
JK_RS01740JK_RS01745
Partner old locus tags
jk0341jk0342
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_005296686.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJK_RS01740Primary locus identifier stored in the genes table.
Old locus tagjk0341Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_007164.1Sequence record reported by the local genomic context database.
Genomic interval410 007-410 714 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span410 007-412 337 ntGCF_000006605::NC_007164.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006605::NC_007164.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_007164.1All displayed genes belong to this local TCS context.
Neighborhood span410 007-412 337 nt2 331 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
410 007 nt412 337 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JK_RS01740GCF_000006605#JK_RS01740
RROmpRCurrent focus
410 007-410 714 nt · Forward (+)
JK_RS01745GCF_000006605#JK_RS01745
HKClassic
410 727-412 337 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006605#JK_RS01740The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1016370
Simplified PFAM architecture for RROC_1016370
PFAM domain coverage: 184 / 235 aa (78.3%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[11-120] | Trans_reg_C[157-230]
- Domain count: 2
- Matched identifier: RROC_1016370
- Positioned domains: Response_reg 11-120 ; Response_reg 11-120 ; Trans_reg_C 157-230 ; Trans_reg_C 157-230
Cluster members and taxonomy
Representative gene: GCF_000006605#JK_RS01740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 306 537 · GCF_000006605
AssemblyASM660v1 · Complete Genomehaploid
Genome composition2 476 822 bp · 61,5% GCCorynebacterium jeikeium K411
Signal transduction countsGenes 18 · HK 9 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderMycobacterialesFamilyCorynebacteriaceaeGenusCorynebacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Mycobacteriales6Corynebacteriaceae7Corynebacterium
Related genes
Preview from the same derived genome key