1 HisKA_3#1
202-268 aa · 67 aa · 16.5% of protein
Raw token
HisKA_3:202:5.57e-23:268:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JK_RS08450
Histidine kinase, Classic
Corynebacterium jeikeium K411 · GCF_000006605
ClassHKTypeClassicLength405 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000006605#JK_RS08450Stable P2CS identifier used across views.
GenomeGCF_000006605Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length405 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 405 aa (38.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa405 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
316-403 aa · 88 aa · 21.7% of protein
Raw token
HATPase_c:316:0.000000000013:403:106:109- Raw architecture: HisKA_3:202:5.57e-23:268:67:68#HATPase_c:316:0.000000000013:403:106:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000006605::NC_007164.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1933368-1935269Genomic interval covered by the local TCS group.
Identifiers
Old locus tagjk1656RefSeq proteinWP_011274032.1
Context group ID
GCF_000006605::NC_007164.1::G00008Context members
JK_RS08445JK_RS08450
Partner locus tags
JK_RS08445JK_RS08450
Partner old locus tags
jk1655jk1656
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_011274032.1Primary protein accession used for annex mappings.
UniProt accessionQ4JTM5Primary UniProt accession resolved in the annex database.
UniProt IDQ4JTM5_CORJKDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJK_RS08450Primary locus identifier stored in the genes table.
Old locus tagjk1656Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_007164.1Sequence record reported by the local genomic context database.
Genomic interval1 934 052-1 935 269 nt1 218 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 933 368-1 935 269 ntGCF_000006605::NC_007164.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006605::NC_007164.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_007164.1All displayed genes belong to this local TCS context.
Neighborhood span1 933 368-1 935 269 nt1 902 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 933 368 nt1 935 269 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JK_RS08445GCF_000006605#JK_RS08445
RRNarL
1 933 368-1 934 051 nt · Reverse (-)
JK_RS08450GCF_000006605#JK_RS08450
HKClassicCurrent focus
1 934 052-1 935 269 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006605#JK_RS08450The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2397555
Simplified PFAM architecture for HKOC_2397555
PFAM domain coverage: 66 / 405 aa (16.3%)
1 aa405 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[202-267]
- Domain count: 1
- Matched identifier: HKOC_2397555
- Positioned domains: HisKA_3 202-267
Cluster members and taxonomy
Representative gene: GCF_000006605#JK_RS08450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 306 537 · GCF_000006605
AssemblyASM660v1 · Complete Genomehaploid
Genome composition2 476 822 bp · 61,5% GCCorynebacterium jeikeium K411
Signal transduction countsGenes 18 · HK 9 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderMycobacterialesFamilyCorynebacteriaceaeGenusCorynebacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Mycobacteriales6Corynebacteriaceae7Corynebacterium
Related genes
Preview from the same derived genome key