1 Response_reg#1
6-116 aa · 111 aa · 48.9% of protein
Raw token
Response_reg:6:5.32e-29:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JK_RS08445
Response regulator NarL family
Corynebacterium jeikeium K411 · GCF_000006605
ClassRRTypeNarLLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000006605#JK_RS08445Stable P2CS identifier used across views.
GenomeGCF_000006605Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 227 aa (74.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
154-211 aa · 58 aa · 25.6% of protein
Raw token
HTH_LUXR:154:1.72e-22:211:58:58- Raw architecture: Response_reg:6:5.32e-29:116:111:111#HTH_LUXR:154:1.72e-22:211:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000006605::NC_007164.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1933368-1935269Genomic interval covered by the local TCS group.
Identifiers
Old locus tagjk1655RefSeq proteinWP_011274031.1
Context group ID
GCF_000006605::NC_007164.1::G00008Context members
JK_RS08445JK_RS08450
Partner locus tags
JK_RS08445JK_RS08450
Partner old locus tags
jk1655jk1656
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_011274031.1Primary protein accession used for annex mappings.
UniProt accessionQ4JTM6Primary UniProt accession resolved in the annex database.
UniProt IDQ4JTM6_CORJKDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJK_RS08445Primary locus identifier stored in the genes table.
Old locus tagjk1655Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_007164.1Sequence record reported by the local genomic context database.
Genomic interval1 933 368-1 934 051 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 933 368-1 935 269 ntGCF_000006605::NC_007164.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006605::NC_007164.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_007164.1All displayed genes belong to this local TCS context.
Neighborhood span1 933 368-1 935 269 nt1 902 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 933 368 nt1 935 269 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JK_RS08445GCF_000006605#JK_RS08445
RRNarLCurrent focus
1 933 368-1 934 051 nt · Reverse (-)
JK_RS08450GCF_000006605#JK_RS08450
HKClassic
1 934 052-1 935 269 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006605#JK_RS08445The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1353988
Simplified PFAM architecture for RROC_1353988
PFAM domain coverage: 168 / 227 aa (74.0%)
1 aa227 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-116] | GerE[155-211]
- Domain count: 2
- Matched identifier: RROC_1353988
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; GerE 155-211 ; GerE 155-211
Cluster members and taxonomy
Representative gene: GCF_000006605#JK_RS08445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 306 537 · GCF_000006605
AssemblyASM660v1 · Complete Genomehaploid
Genome composition2 476 822 bp · 61,5% GCCorynebacterium jeikeium K411
Signal transduction countsGenes 18 · HK 9 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderMycobacterialesFamilyCorynebacteriaceaeGenusCorynebacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Mycobacteriales6Corynebacteriaceae7Corynebacterium
Related genes
Preview from the same derived genome key