1 HAMP#1
245-314 aa · 70 aa · 12.1% of protein
Raw token
HAMP:245:0.000000000000344:314:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JK_RS08340
Histidine kinase, Classic
Corynebacterium jeikeium K411 · GCF_000006605
ClassHKTypeClassicLength578 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000006605#JK_RS08340Stable P2CS identifier used across views.
GenomeGCF_000006605Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length578 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 578 aa (42.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa578 aa
Domain-by-domain annotation3 items
2 HisKA#2
326-392 aa · 67 aa · 11.6% of protein
Raw token
HisKA:326:0.00000000000000229:392:67:643 HATPase_c#3
439-549 aa · 111 aa · 19.2% of protein
Raw token
HATPase_c:439:5.63e-29:549:111:109- Raw architecture: HAMP:245:0.000000000000344:314:70:69#HisKA:326:0.00000000000000229:392:67:64#HATPase_c:439:5.63e-29:549:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000006605::NC_007164.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1913389-1915809Genomic interval covered by the local TCS group.
Identifiers
Old locus tagjk1634RefSeq proteinWP_005293893.1
Context group ID
GCF_000006605::NC_007164.1::G00007Context members
JK_RS08340JK_RS08345
Partner locus tags
JK_RS08340JK_RS08345
Partner old locus tags
jk1634jk1635
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005293893.1Primary protein accession used for annex mappings.
UniProt accessionQ4JTP8Primary UniProt accession resolved in the annex database.
UniProt IDQ4JTP8_CORJKDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJK_RS08340Primary locus identifier stored in the genes table.
Old locus tagjk1634Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_007164.1Sequence record reported by the local genomic context database.
Genomic interval1 913 389-1 915 125 nt1 737 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 913 389-1 915 809 ntGCF_000006605::NC_007164.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006605::NC_007164.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_007164.1All displayed genes belong to this local TCS context.
Neighborhood span1 913 389-1 915 809 nt2 421 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 913 389 nt1 915 809 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JK_RS08340GCF_000006605#JK_RS08340
HKClassicCurrent focus
1 913 389-1 915 125 nt · Reverse (-)
JK_RS08345GCF_000006605#JK_RS08345
RROmpR
1 915 132-1 915 809 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006605#JK_RS08340The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1172234
Simplified PFAM architecture for HKOC_1172234
PFAM domain coverage: 228 / 578 aa (39.4%)
1 aa578 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[263-313] | HisKA[326-392] | HATPase_c[439-548]
- Domain count: 3
- Matched identifier: HKOC_1172234
- Positioned domains: HAMP 263-313 ; HisKA 326-392 ; HATPase_c 439-548
Cluster members and taxonomy
Representative gene: GCF_000006605#JK_RS08340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 306 537 · GCF_000006605
AssemblyASM660v1 · Complete Genomehaploid
Genome composition2 476 822 bp · 61,5% GCCorynebacterium jeikeium K411
Signal transduction countsGenes 18 · HK 9 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderMycobacterialesFamilyCorynebacteriaceaeGenusCorynebacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Mycobacteriales6Corynebacteriaceae7Corynebacterium
Related genes
Preview from the same derived genome key