1 HAMP#1
69-139 aa · 71 aa · 18.9% of protein
Raw token
HAMP:69:0.00000000000426:139:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JK_RS07350
Histidine kinase, Classic
Corynebacterium jeikeium K411 · GCF_000006605
ClassHKTypeClassicLength375 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000006605#JK_RS07350Stable P2CS identifier used across views.
GenomeGCF_000006605Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length375 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 375 aa (66.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa375 aa
Domain-by-domain annotation3 items
2 HisKA#2
144-206 aa · 63 aa · 16.8% of protein
Raw token
HisKA:144:0.000000000336:206:63:643 HATPase_c#3
254-367 aa · 114 aa · 30.4% of protein
Raw token
HATPase_c:254:3.1e-30:367:114:109- Raw architecture: HAMP:69:0.00000000000426:139:71:69#HisKA:144:0.000000000336:206:63:64#HATPase_c:254:3.1e-30:367:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000006605::NC_007164.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1688446-1690292Genomic interval covered by the local TCS group.
Identifiers
Old locus tagjk1431RefSeq proteinWP_005293210.1
Context group ID
GCF_000006605::NC_007164.1::G00005Context members
JK_RS07350JK_RS07355
Partner locus tags
JK_RS07350JK_RS07355
Partner old locus tags
jk1431jk1432
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005293210.1Primary protein accession used for annex mappings.
UniProt accessionQ4JUA3Primary UniProt accession resolved in the annex database.
UniProt IDQ4JUA3_CORJKDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJK_RS07350Primary locus identifier stored in the genes table.
Old locus tagjk1431Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_007164.1Sequence record reported by the local genomic context database.
Genomic interval1 688 446-1 689 573 nt1 128 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 688 446-1 690 292 ntGCF_000006605::NC_007164.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006605::NC_007164.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_007164.1All displayed genes belong to this local TCS context.
Neighborhood span1 688 446-1 690 292 nt1 847 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 688 446 nt1 690 292 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JK_RS07350GCF_000006605#JK_RS07350
HKClassicCurrent focus
1 688 446-1 689 573 nt · Reverse (-)
JK_RS07355GCF_000006605#JK_RS07355
RROmpR
1 689 570-1 690 292 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006605#JK_RS07350The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2649349
Simplified PFAM architecture for HKOC_2649349
PFAM domain coverage: 229 / 375 aa (61.1%)
1 aa375 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[86-138] | HisKA[144-206] | HATPase_c[254-366]
- Domain count: 3
- Matched identifier: HKOC_2649349
- Positioned domains: HAMP 86-138 ; HisKA 144-206 ; HATPase_c 254-366
Cluster members and taxonomy
Representative gene: GCF_000006605#JK_RS07350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 306 537 · GCF_000006605
AssemblyASM660v1 · Complete Genomehaploid
Genome composition2 476 822 bp · 61,5% GCCorynebacterium jeikeium K411
Signal transduction countsGenes 18 · HK 9 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderMycobacterialesFamilyCorynebacteriaceaeGenusCorynebacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Mycobacteriales6Corynebacteriaceae7Corynebacterium
Related genes
Preview from the same derived genome key