1 KdpD#1
3-220 aa · 218 aa · 24.3% of protein
Raw token
KdpD:3:1.53e-117:220:218:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JK_RS06540
Histidine kinase, Classic
Corynebacterium jeikeium K411 · GCF_000006605
ClassHKTypeClassicLength898 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000006605#JK_RS06540Stable P2CS identifier used across views.
GenomeGCF_000006605Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length898 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage402 / 898 aa (44.8%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa898 aa
Domain-by-domain annotation3 items
2 HisKA#2
651-715 aa · 65 aa · 7.2% of protein
Raw token
HisKA:651:0.000000000000104:715:65:643 HATPase_c#3
757-875 aa · 119 aa · 13.3% of protein
Raw token
HATPase_c:757:3.03e-21:875:119:109- Raw architecture: KdpD:3:1.53e-117:220:218:210#HisKA:651:0.000000000000104:715:65:64#HATPase_c:757:3.03e-21:875:119:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000006605::NC_007164.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1495804-1499189Genomic interval covered by the local TCS group.
Identifiers
Old locus tagjk1272RefSeq proteinWP_011273770.1
Context group ID
GCF_000006605::NC_007164.1::G00004Context members
JK_RS06540JK_RS06545
Partner locus tags
JK_RS06540JK_RS06545
Partner old locus tags
jk1272jk1273
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_011273770.1Primary protein accession used for annex mappings.
UniProt accessionQ4JUR7Primary UniProt accession resolved in the annex database.
UniProt IDQ4JUR7_CORJKDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJK_RS06540Primary locus identifier stored in the genes table.
Old locus tagjk1272Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_007164.1Sequence record reported by the local genomic context database.
Genomic interval1 495 804-1 498 500 nt2 697 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 495 804-1 499 189 ntGCF_000006605::NC_007164.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006605::NC_007164.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_007164.1All displayed genes belong to this local TCS context.
Neighborhood span1 495 804-1 499 189 nt3 386 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 495 804 nt1 499 189 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JK_RS06540GCF_000006605#JK_RS06540
HKClassicCurrent focus
1 495 804-1 498 500 nt · Forward (+)
JK_RS06545GCF_000006605#JK_RS06545
RROmpR
1 498 497-1 499 189 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006605#JK_RS06540The current gene is the representative for this cluster.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0408839
Simplified PFAM architecture for HKOC_0408839
PFAM domain coverage: 511 / 898 aa (56.9%)
1 aa898 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[3-220] | DUF4118[412-519] | HisKA[651-714] | HATPase_c[757-877]
- Domain count: 4
- Matched identifier: HKOC_0408839
- Positioned domains: KdpD 3-220 ; DUF4118 412-519 ; HisKA 651-714 ; HATPase_c 757-877
Cluster members and taxonomy
Representative gene: GCF_000006605#JK_RS06540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 306 537 · GCF_000006605
AssemblyASM660v1 · Complete Genomehaploid
Genome composition2 476 822 bp · 61,5% GCCorynebacterium jeikeium K411
Signal transduction countsGenes 18 · HK 9 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderMycobacterialesFamilyCorynebacteriaceaeGenusCorynebacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Mycobacteriales6Corynebacteriaceae7Corynebacterium
Related genes
Preview from the same derived genome key