1 Response_reg#1
7-127 aa · 121 aa · 56.0% of protein
Raw token
Response_reg:7:1.34e-25:127:121:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JK_RS06005
Response regulator NarL family
Corynebacterium jeikeium K411 · GCF_000006605
ClassRRTypeNarLLength216 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000006605#JK_RS06005Stable P2CS identifier used across views.
GenomeGCF_000006605Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length216 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 216 aa (82.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa216 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
152-209 aa · 58 aa · 26.9% of protein
Raw token
HTH_LUXR:152:9.14e-22:209:58:58- Raw architecture: Response_reg:7:1.34e-25:127:121:111#HTH_LUXR:152:9.14e-22:209:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000006605::NC_007164.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1362011-1363767Genomic interval covered by the local TCS group.
Identifiers
Old locus tagjk1161RefSeq proteinWP_005295237.1
Context group ID
GCF_000006605::NC_007164.1::G00003Context members
JK_RS06005JK_RS06010
Partner locus tags
JK_RS06005JK_RS06010
Partner old locus tags
jk1161jk1162
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005295237.1Primary protein accession used for annex mappings.
UniProt accessionQ4JV32Primary UniProt accession resolved in the annex database.
UniProt IDQ4JV32_CORJKDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJK_RS06005Primary locus identifier stored in the genes table.
Old locus tagjk1161Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_007164.1Sequence record reported by the local genomic context database.
Genomic interval1 362 011-1 362 661 nt651 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 362 011-1 363 767 ntGCF_000006605::NC_007164.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006605::NC_007164.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_007164.1All displayed genes belong to this local TCS context.
Neighborhood span1 362 011-1 363 767 nt1 757 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 362 011 nt1 363 767 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JK_RS06005GCF_000006605#JK_RS06005
RRNarLCurrent focus
1 362 011-1 362 661 nt · Reverse (-)
JK_RS06010GCF_000006605#JK_RS06010
HKClassic
1 362 673-1 363 767 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006605#JK_RS06005The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1878763
Simplified PFAM architecture for RROC_1878763
PFAM domain coverage: 177 / 216 aa (81.9%)
1 aa216 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[7-126] | GerE[153-209]
- Domain count: 2
- Matched identifier: RROC_1878763
- Positioned domains: Response_reg 7-126 ; Response_reg 7-126 ; GerE 153-209 ; GerE 153-209
Cluster members and taxonomy
Representative gene: GCF_000006605#JK_RS06005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 306 537 · GCF_000006605
AssemblyASM660v1 · Complete Genomehaploid
Genome composition2 476 822 bp · 61,5% GCCorynebacterium jeikeium K411
Signal transduction countsGenes 18 · HK 9 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderMycobacterialesFamilyCorynebacteriaceaeGenusCorynebacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Mycobacteriales6Corynebacteriaceae7Corynebacterium
Related genes
Preview from the same derived genome key