1 HisKA_3#1
179-244 aa · 66 aa · 17.6% of protein
Raw token
HisKA_3:179:1.47e-18:244:66:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JK_RS04625
Histidine kinase, Classic
Corynebacterium jeikeium K411 · GCF_000006605
ClassHKTypeClassicLength375 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000006605#JK_RS04625Stable P2CS identifier used across views.
GenomeGCF_000006605Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length375 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage139 / 375 aa (37.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa375 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
283-355 aa · 73 aa · 19.5% of protein
Raw token
HATPase_c:283:0.000000000109:355:93:109- Raw architecture: HisKA_3:179:1.47e-18:244:66:68#HATPase_c:283:0.000000000109:355:93:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000006605::NC_007164.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1061805-1063531Genomic interval covered by the local TCS group.
Identifiers
Old locus tagjk0888RefSeq proteinWP_011273478.1
Context group ID
GCF_000006605::NC_007164.1::G00002Context members
JK_RS04620JK_RS04625
Partner locus tags
JK_RS04620JK_RS04625
Partner old locus tags
jk0887jk0888
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_011273478.1Primary protein accession used for annex mappings.
UniProt accessionQ4JVV5Primary UniProt accession resolved in the annex database.
UniProt IDQ4JVV5_CORJKDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJK_RS04625Primary locus identifier stored in the genes table.
Old locus tagjk0888Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_007164.1Sequence record reported by the local genomic context database.
Genomic interval1 062 404-1 063 531 nt1 128 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 061 805-1 063 531 ntGCF_000006605::NC_007164.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006605::NC_007164.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_007164.1All displayed genes belong to this local TCS context.
Neighborhood span1 061 805-1 063 531 nt1 727 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 061 805 nt1 063 531 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JK_RS04620GCF_000006605#JK_RS04620
RRNarL
1 061 805-1 062 407 nt · Reverse (-)
JK_RS04625GCF_000006605#JK_RS04625
HKClassicCurrent focus
1 062 404-1 063 531 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006605#JK_RS04625The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2649348
Simplified PFAM architecture for HKOC_2649348
PFAM domain coverage: 132 / 375 aa (35.2%)
1 aa375 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[179-243] | HATPase_c[283-349]
- Domain count: 2
- Matched identifier: HKOC_2649348
- Positioned domains: HisKA_3 179-243 ; HATPase_c 283-349
Cluster members and taxonomy
Representative gene: GCF_000006605#JK_RS04625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 306 537 · GCF_000006605
AssemblyASM660v1 · Complete Genomehaploid
Genome composition2 476 822 bp · 61,5% GCCorynebacterium jeikeium K411
Signal transduction countsGenes 18 · HK 9 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderMycobacterialesFamilyCorynebacteriaceaeGenusCorynebacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Mycobacteriales6Corynebacteriaceae7Corynebacterium
Related genes
Preview from the same derived genome key