1 Response_reg#1
5-115 aa · 111 aa · 55.5% of protein
Raw token
Response_reg:5:4.52e-27:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JK_RS04620
Response regulator NarL family
Corynebacterium jeikeium K411 · GCF_000006605
ClassRRTypeNarLLength200 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000006605#JK_RS04620Stable P2CS identifier used across views.
GenomeGCF_000006605Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length200 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 200 aa (84.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa200 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
137-194 aa · 58 aa · 29.0% of protein
Raw token
HTH_LUXR:137:1.02e-20:194:58:58- Raw architecture: Response_reg:5:4.52e-27:115:113:111#HTH_LUXR:137:1.02e-20:194:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000006605::NC_007164.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1061805-1063531Genomic interval covered by the local TCS group.
Identifiers
Old locus tagjk0887RefSeq proteinWP_011273477.1
Context group ID
GCF_000006605::NC_007164.1::G00002Context members
JK_RS04620JK_RS04625
Partner locus tags
JK_RS04620JK_RS04625
Partner old locus tags
jk0887jk0888
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_011273477.1Primary protein accession used for annex mappings.
UniProt accessionQ4JVV6Primary UniProt accession resolved in the annex database.
UniProt IDQ4JVV6_CORJKDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJK_RS04620Primary locus identifier stored in the genes table.
Old locus tagjk0887Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_007164.1Sequence record reported by the local genomic context database.
Genomic interval1 061 805-1 062 407 nt603 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 061 805-1 063 531 ntGCF_000006605::NC_007164.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006605::NC_007164.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_007164.1All displayed genes belong to this local TCS context.
Neighborhood span1 061 805-1 063 531 nt1 727 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 061 805 nt1 063 531 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JK_RS04620GCF_000006605#JK_RS04620
RRNarLCurrent focus
1 061 805-1 062 407 nt · Reverse (-)
JK_RS04625GCF_000006605#JK_RS04625
HKClassic
1 062 404-1 063 531 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006605#JK_RS04620The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2134439
Simplified PFAM architecture for RROC_2134439
PFAM domain coverage: 167 / 200 aa (83.5%)
1 aa200 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-115] | GerE[139-194]
- Domain count: 2
- Matched identifier: RROC_2134439
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; GerE 139-194 ; GerE 139-194
Cluster members and taxonomy
Representative gene: GCF_000006605#JK_RS04620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 306 537 · GCF_000006605
AssemblyASM660v1 · Complete Genomehaploid
Genome composition2 476 822 bp · 61,5% GCCorynebacterium jeikeium K411
Signal transduction countsGenes 18 · HK 9 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderMycobacterialesFamilyCorynebacteriaceaeGenusCorynebacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Mycobacteriales6Corynebacteriaceae7Corynebacterium
Related genes
Preview from the same derived genome key