1 HAMP#1
229-298 aa · 70 aa · 13.1% of protein
Raw token
HAMP:229:0.00000000000023:298:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JK_RS01745
Histidine kinase, Classic
Corynebacterium jeikeium K411 · GCF_000006605
ClassHKTypeClassicLength536 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000006605#JK_RS01745Stable P2CS identifier used across views.
GenomeGCF_000006605Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length536 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 536 aa (46.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa536 aa
Domain-by-domain annotation3 items
2 HisKA#2
316-380 aa · 65 aa · 12.1% of protein
Raw token
HisKA:316:3.54e-18:380:65:643 HATPase_c#3
424-536 aa · 113 aa · 21.1% of protein
Raw token
HATPase_c:424:4.75e-40:536:113:109- Raw architecture: HAMP:229:0.00000000000023:298:70:69#HisKA:316:3.54e-18:380:65:64#HATPase_c:424:4.75e-40:536:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000006605::NC_007164.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span410007-412337Genomic interval covered by the local TCS group.
Identifiers
Old locus tagjk0342RefSeq proteinWP_011273053.1
Context group ID
GCF_000006605::NC_007164.1::G00001Context members
JK_RS01740JK_RS01745
Partner locus tags
JK_RS01740JK_RS01745
Partner old locus tags
jk0341jk0342
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_011273053.1Primary protein accession used for annex mappings.
UniProt accessionQ4JXG3Primary UniProt accession resolved in the annex database.
UniProt IDQ4JXG3_CORJKDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJK_RS01745Primary locus identifier stored in the genes table.
Old locus tagjk0342Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_007164.1Sequence record reported by the local genomic context database.
Genomic interval410 727-412 337 nt1 611 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span410 007-412 337 ntGCF_000006605::NC_007164.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000006605::NC_007164.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_007164.1All displayed genes belong to this local TCS context.
Neighborhood span410 007-412 337 nt2 331 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
410 007 nt412 337 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JK_RS01740GCF_000006605#JK_RS01740
RROmpR
410 007-410 714 nt · Forward (+)
JK_RS01745GCF_000006605#JK_RS01745
HKClassicCurrent focus
410 727-412 337 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000006605#JK_RS01745The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1333861
Simplified PFAM architecture for HKOC_1333861
PFAM domain coverage: 228 / 536 aa (42.5%)
1 aa536 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[246-297] | HisKA[317-380] | HATPase_c[424-535]
- Domain count: 3
- Matched identifier: HKOC_1333861
- Positioned domains: HAMP 246-297 ; HisKA 317-380 ; HATPase_c 424-535
Cluster members and taxonomy
Representative gene: GCF_000006605#JK_RS01745
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 306 537 · GCF_000006605
AssemblyASM660v1 · Complete Genomehaploid
Genome composition2 476 822 bp · 61,5% GCCorynebacterium jeikeium K411
Signal transduction countsGenes 18 · HK 9 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderMycobacterialesFamilyCorynebacteriaceaeGenusCorynebacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Mycobacteriales6Corynebacteriaceae7Corynebacterium
Related genes
Preview from the same derived genome key