1 PAS_9#1
137-241 aa · 105 aa · 18.5% of protein
Raw token
PAS_9:137:0.00000000000000328:241:105:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS21885
Probable incomplete histidine kinase
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassHKTypeClassicLength567 aaTM0ValidatedNoCompleteNoContextNo local context
Gene IDGCF_000005825#BPOF4_RS21885Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Selected clusterNo clusterThis gene is not linked to a local CD-HIT cluster.
External referencesMIST4 BPOF4_RS21885MIST4
Domain signature
Compact overview inferred from the domain field
PAS_9PAS_3HisKA
Protein length567 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage346 / 567 aa (61.0%)Merged over positioned domains only.
Domain description2 PAS_9,1 PAS_3,1 HisKASummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa567 aa
Domain-by-domain annotation4 items
2 PAS_9#2
264-365 aa · 102 aa · 18.0% of protein
Raw token
PAS_9:264:0.000000254:365:107:1023 PAS_3#3
402-482 aa · 81 aa · 14.3% of protein
Raw token
PAS_3:402:3.58e-18:482:84:894 HisKA#4
507-564 aa · 58 aa · 10.2% of protein
Raw token
HisKA:507:0.000000000000039:564:58:64- Raw architecture: PAS_9:137:0.00000000000000328:241:105:102#PAS_9:264:0.000000254:365:107:102#PAS_3:402:3.58e-18:482:84:89#HisKA:507:0.000000000000039:564:58:64
- Domain description: 2 PAS_9,1 PAS_3,1 HisKA
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: No
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
No local TCS context mapping is available for this gene.
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS21885Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconUnavailableNo contig or replicon mapping is available for this gene.
Genomic intervalUnavailableNo start/end genomic coordinates are available for this gene.
StrandUnavailableStrand sign follows the local context database convention.
Local TCS group spanUnavailableNo grouped neighborhood span is available for this gene.
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
No local TCS neighborhood is available for this gene on this server.
Clusters
CD-HIT memberships and selected cluster details for the current gene class
No cluster membership available for this gene.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key