1 PAS_4#1
154-240 aa · 87 aa · 14.4% of protein
Raw token
PAS_4:154:0.00000000442:240:90:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS21155
Histidine kinase, Classic
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassHKTypeClassicLength605 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000005825#BPOF4_RS21155Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
PAS_4PAS_9HisKAHATPase_c
Protein length605 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage356 / 605 aa (58.8%)Merged over positioned domains only.
Domain description1 PAS_4,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa605 aa
Domain-by-domain annotation4 items
2 PAS_9#2
277-376 aa · 100 aa · 16.5% of protein
Raw token
PAS_9:277:0.00000184:376:104:1023 HisKA#3
395-455 aa · 61 aa · 10.1% of protein
Raw token
HisKA:395:8.08e-17:455:61:644 HATPase_c#4
497-604 aa · 108 aa · 17.9% of protein
Raw token
HATPase_c:497:4.49e-29:604:111:109- Raw architecture: PAS_4:154:0.00000000442:240:90:110#PAS_9:277:0.00000184:376:104:102#HisKA:395:8.08e-17:455:61:64#HATPase_c:497:4.49e-29:604:111:109
- Domain description: 1 PAS_4,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000005825::NC_013791.2::G00018
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1264490-1266307Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_14235RefSeq proteinWP_012958258.1
Context group ID
GCF_000005825::NC_013791.2::G00018Context members
BPOF4_RS21155
Partner locus tags
BPOF4_RS21155
Partner old locus tags
BpOF4_14235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012958258.1Primary protein accession used for annex mappings.
UniProt accessionD3FYP4Primary UniProt accession resolved in the annex database.
UniProt IDD3FYP4_ALKPODisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS21155Primary locus identifier stored in the genes table.
Old locus tagBpOF4_14235Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval1 264 490-1 266 307 nt1 818 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 264 490-1 266 307 ntGCF_000005825::NC_013791.2::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span1 264 490-1 266 307 nt1 818 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 264 490 nt1 266 307 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BPOF4_RS21155GCF_000005825#BPOF4_RS21155
HKClassicCurrent focus
1 264 490-1 266 307 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS21155The current gene is the representative for this cluster.
PFAM architecturePAS_9 + PAS_4 + PAS_9 + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1028357
Simplified PFAM architecture for HKOC_1028357
PFAM domain coverage: 395 / 605 aa (65.3%)
1 aa605 aa
PAS_9PAS_4PAS_9HisKAHATPase_c
- Simplified architecture: PAS_9 + PAS_4 + PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_9[20-53] | PAS_4[155-253] | PAS_9[280-376] | HisKA[395-454] | HATPase_c[498-602]
- Domain count: 5
- Matched identifier: HKOC_1028357
- Positioned domains: PAS_9 20-53 ; PAS_4 155-253 ; PAS_9 280-376 ; HisKA 395-454 ; HATPase_c 498-602
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS21155
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 1 over 1 total members. Page 1 / 1.
GCF_000005825#BPOF4_RS21155 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key