1 Response_reg#1
5-114 aa · 110 aa · 46.6% of protein
Raw token
Response_reg:5:1.08e-39:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS19060
Response regulator OmpR family
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000005825#BPOF4_RS19060Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 236 aa (79.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 32.6% of protein
Raw token
Trans_reg_C:151:2.46e-34:227:77:77- Raw architecture: Response_reg:5:1.08e-39:114:111:111#Trans_reg_C:151:2.46e-34:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000005825::NC_013791.2::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3831882-3834415Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_07830RefSeq proteinWP_012960895.1
Context group ID
GCF_000005825::NC_013791.2::G00044Context members
BPOF4_RS19055BPOF4_RS19060
Partner locus tags
BPOF4_RS19055BPOF4_RS19060
Partner old locus tags
BpOF4_07825BpOF4_07830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012960895.1Primary protein accession used for annex mappings.
UniProt accessionD3FQF2Primary UniProt accession resolved in the annex database.
UniProt IDD3FQF2_ALKPODisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS19060Primary locus identifier stored in the genes table.
Old locus tagBpOF4_07830Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval3 833 705-3 834 415 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 831 882-3 834 415 ntGCF_000005825::NC_013791.2::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span3 831 882-3 834 415 nt2 534 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 831 882 nt3 834 415 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BPOF4_RS19055GCF_000005825#BPOF4_RS19055
HKClassic
3 831 882-3 833 705 nt · Reverse (-)
BPOF4_RS19060GCF_000005825#BPOF4_RS19060
RROmpRCurrent focus
3 833 705-3 834 415 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS19060The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988176
Simplified PFAM architecture for RROC_0988176
PFAM domain coverage: 187 / 236 aa (79.2%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[151-227]
- Domain count: 2
- Matched identifier: RROC_0988176
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 151-227 ; Trans_reg_C 151-227
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS19060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key