1 PAS_9#1
196-285 aa · 90 aa · 17.6% of protein
Raw token
PAS_9:196:0.000000000000249:285:102:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS18935
Histidine kinase, Classic
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassHKTypeClassicLength510 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000005825#BPOF4_RS18935Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_c
Protein length510 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 510 aa (49.0%)Merged over positioned domains only.
Domain description1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa510 aa
Domain-by-domain annotation3 items
2 HisKA#2
303-358 aa · 56 aa · 11.0% of protein
Raw token
HisKA:303:0.000000000000235:358:61:643 HATPase_c#3
400-503 aa · 104 aa · 20.4% of protein
Raw token
HATPase_c:400:3.85e-26:503:107:109- Raw architecture: PAS_9:196:0.000000000000249:285:102:102#HisKA:303:0.000000000000235:358:61:64#HATPase_c:400:3.85e-26:503:107:109
- Domain description: 1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000005825::NC_013791.2::G00043
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span3807004-3808536Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_07700RefSeq proteinWP_012960869.1
Context group ID
GCF_000005825::NC_013791.2::G00043Context members
BPOF4_RS18935
Partner locus tags
BPOF4_RS18935
Partner old locus tags
BpOF4_07700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012960869.1Primary protein accession used for annex mappings.
UniProt accessionD3FQC6Primary UniProt accession resolved in the annex database.
UniProt IDD3FQC6_ALKPODisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS18935Primary locus identifier stored in the genes table.
Old locus tagBpOF4_07700Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval3 807 004-3 808 536 nt1 533 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 807 004-3 808 536 ntGCF_000005825::NC_013791.2::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span3 807 004-3 808 536 nt1 533 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 807 004 nt3 808 536 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BPOF4_RS18935GCF_000005825#BPOF4_RS18935
HKClassicCurrent focus
3 807 004-3 808 536 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS18935The current gene is the representative for this cluster.
PFAM architecturePAS_9 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1428025
Simplified PFAM architecture for HKOC_1428025
PFAM domain coverage: 249 / 510 aa (48.8%)
1 aa510 aa
PAS_9HisKAHATPase_c
- Simplified architecture: PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_9[197-285] | HisKA[303-357] | HATPase_c[400-504]
- Domain count: 3
- Matched identifier: HKOC_1428025
- Positioned domains: PAS_9 197-285 ; HisKA 303-357 ; HATPase_c 400-504
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS18935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key