1 HisKA_3#1
171-239 aa · 69 aa · 18.7% of protein
Raw token
HisKA_3:171:8e-16:239:69:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS17070
Histidine kinase, Classic
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassHKTypeClassicLength369 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000005825#BPOF4_RS17070Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length369 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 369 aa (43.4%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa369 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
279-369 aa · 91 aa · 24.7% of protein
Raw token
HATPase_c:279:0.00000000000000437:369:106:109- Raw architecture: HisKA_3:171:8e-16:239:69:68#HATPase_c:279:0.00000000000000437:369:106:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000005825::NC_013791.2::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3395570-3397486Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_05700RefSeq proteinWP_012960475.1
Context group ID
GCF_000005825::NC_013791.2::G00040Context members
BPOF4_RS17065BPOF4_RS17070
Partner locus tags
BPOF4_RS17065BPOF4_RS17070
Partner old locus tags
BpOF4_05695BpOF4_05700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012960475.1Primary protein accession used for annex mappings.
UniProt accessionD3FZG0Primary UniProt accession resolved in the annex database.
UniProt IDD3FZG0_ALKPODisplay identifier provided by UniProt.
GO / PubMed6 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS17070Primary locus identifier stored in the genes table.
Old locus tagBpOF4_05700Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval3 396 362-3 397 486 nt1 125 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 395 570-3 397 486 ntGCF_000005825::NC_013791.2::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span3 395 570-3 397 486 nt1 917 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 395 570 nt3 397 486 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BPOF4_RS17065GCF_000005825#BPOF4_RS17065
RRNarL
3 395 570-3 396 271 nt · Reverse (-)
BPOF4_RS17070GCF_000005825#BPOF4_RS17070
HKClassicCurrent focus
3 396 362-3 397 486 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS17070The current gene is the representative for this cluster.
PFAM architectureDegS + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2691192
Simplified PFAM architecture for HKOC_2691192
PFAM domain coverage: 318 / 369 aa (86.2%)
1 aa369 aa
DegSHisKA_3HATPase_c
- Simplified architecture: DegS + HisKA_3 + HATPase_c
- Raw architecture: DegS[3-161] | HisKA_3[171-239] | HATPase_c[279-368]
- Domain count: 3
- Matched identifier: HKOC_2691192
- Positioned domains: DegS 3-161 ; HisKA_3 171-239 ; HATPase_c 279-368
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS17070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key