1 Response_reg#1
5-117 aa · 113 aa · 53.3% of protein
Raw token
Response_reg:5:7.42e-35:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS15760
Response regulator NarL family
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassRRTypeNarLLength212 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000005825#BPOF4_RS15760Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length212 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 212 aa (79.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa212 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
151-206 aa · 56 aa · 26.4% of protein
Raw token
HTH_LUXR:151:3.5e-21:206:56:58- Raw architecture: Response_reg:5:7.42e-35:117:113:111#HTH_LUXR:151:3.5e-21:206:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000005825::NC_013791.2::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3143136-3144907Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_04300RefSeq proteinWP_041822499.1
Context group ID
GCF_000005825::NC_013791.2::G00038Context members
BPOF4_RS15760BPOF4_RS15765
Partner locus tags
BPOF4_RS15760BPOF4_RS15765
Partner old locus tags
BpOF4_04300BpOF4_04305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_041822499.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS15760Primary locus identifier stored in the genes table.
Old locus tagBpOF4_04300Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval3 143 136-3 143 774 nt639 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 143 136-3 144 907 ntGCF_000005825::NC_013791.2::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span3 143 136-3 144 907 nt1 772 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 143 136 nt3 144 907 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BPOF4_RS15760GCF_000005825#BPOF4_RS15760
RRNarLCurrent focus
3 143 136-3 143 774 nt · Reverse (-)
BPOF4_RS15765GCF_000005825#BPOF4_RS15765
HKClassic
3 143 771-3 144 907 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS15760The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1985897
Simplified PFAM architecture for RROC_1985897
PFAM domain coverage: 169 / 212 aa (79.7%)
1 aa212 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-117] | GerE[151-206]
- Domain count: 2
- Matched identifier: RROC_1985897
- Positioned domains: Response_reg 5-117 ; Response_reg 5-117 ; GerE 151-206 ; GerE 151-206
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS15760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key