1 Hpt#1
5-98 aa · 94 aa · 13.5% of protein
Raw token
Hpt:5:1.49e-17:98:94:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS14045
Histidine kinase, CheA
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassHKTypeCheALength696 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000005825#BPOF4_RS14045Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length696 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage422 / 696 aa (60.6%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa696 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
317-376 aa · 60 aa · 8.6% of protein
Raw token
H-kinase_dim:317:7.84e-17:376:67:673 HATPase_c#3
424-563 aa · 140 aa · 20.1% of protein
Raw token
HATPase_c:424:0.00000000000000169:563:140:1094 CheW#4
568-695 aa · 128 aa · 18.4% of protein
Raw token
CheW:568:1.54e-25:695:135:138- Raw architecture: Hpt:5:1.49e-17:98:94:84#H-kinase_dim:317:7.84e-17:376:67:67#HATPase_c:424:0.00000000000000169:563:140:109#CheW:568:1.54e-25:695:135:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000005825::NC_013791.2::G00036
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2764620-2766707Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_02525RefSeq proteinWP_012959850.1
Context group ID
GCF_000005825::NC_013791.2::G00036Context members
BPOF4_RS14045
Partner locus tags
BPOF4_RS14045
Partner old locus tags
BpOF4_02525
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012959850.1Primary protein accession used for annex mappings.
UniProt accessionD3FVQ7Primary UniProt accession resolved in the annex database.
UniProt IDD3FVQ7_ALKPODisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS14045Primary locus identifier stored in the genes table.
Old locus tagBpOF4_02525Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval2 764 620-2 766 707 nt2 088 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 764 620-2 766 707 ntGCF_000005825::NC_013791.2::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span2 764 620-2 766 707 nt2 088 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 764 620 nt2 766 707 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BPOF4_RS14045GCF_000005825#BPOF4_RS14045
HKCheACurrent focus
2 764 620-2 766 707 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS14045The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0777769
Simplified PFAM architecture for HKOC_0777769
PFAM domain coverage: 508 / 696 aa (73.0%)
1 aa696 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[5-104] | P2[175-255] | H-kinase_dim[317-376] | HATPase_c[424-563] | CheW[569-695]
- Domain count: 5
- Matched identifier: HKOC_0777769
- Positioned domains: Hpt 5-104 ; P2 175-255 ; H-kinase_dim 317-376 ; HATPase_c 424-563 ; CheW 569-695
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS14045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key