1 SBP_bac_3#1
27-243 aa · 217 aa · 32.9% of protein
Raw token
SBP_bac_3:27:1.09e-43:243:224:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS13940
Histidine kinase, Classic
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassHKTypeClassicLength660 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000005825#BPOF4_RS13940Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
SBP_bac_3PAS_9HisKAHATPase_c
Protein length660 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage498 / 660 aa (75.5%)Merged over positioned domains only.
Domain description1 SBP_bac_3,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa660 aa
Domain-by-domain annotation4 items
2 PAS_9#2
320-421 aa · 102 aa · 15.5% of protein
Raw token
PAS_9:320:0.0000000000138:421:111:1023 HisKA#3
437-502 aa · 66 aa · 10.0% of protein
Raw token
HisKA:437:0.000000000015:502:66:644 HATPase_c#4
544-656 aa · 113 aa · 17.1% of protein
Raw token
HATPase_c:544:2.4e-23:656:116:109- Raw architecture: SBP_bac_3:27:1.09e-43:243:224:224#PAS_9:320:0.0000000000138:421:111:102#HisKA:437:0.000000000015:502:66:64#HATPase_c:544:2.4e-23:656:116:109
- Domain description: 1 SBP_bac_3,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000005825::NC_013791.2::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2740191-2743531Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_02415RefSeq proteinWP_012959828.1
Context group ID
GCF_000005825::NC_013791.2::G00034Context members
BPOF4_RS13935BPOF4_RS13940
Partner locus tags
BPOF4_RS13935BPOF4_RS13940
Partner old locus tags
BpOF4_02410BpOF4_02415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012959828.1Primary protein accession used for annex mappings.
UniProt accessionD3FVN5Primary UniProt accession resolved in the annex database.
UniProt IDD3FVN5_ALKPODisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS13940Primary locus identifier stored in the genes table.
Old locus tagBpOF4_02415Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval2 741 549-2 743 531 nt1 983 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 740 191-2 743 531 ntGCF_000005825::NC_013791.2::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span2 740 191-2 743 531 nt3 341 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 740 191 nt2 743 531 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BPOF4_RS13935GCF_000005825#BPOF4_RS13935
RRNtrC
2 740 191-2 741 552 nt · Reverse (-)
BPOF4_RS13940GCF_000005825#BPOF4_RS13940
HKClassicCurrent focus
2 741 549-2 743 531 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS13940The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + PAS + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0871989
Simplified PFAM architecture for HKOC_0871989
PFAM domain coverage: 499 / 660 aa (75.6%)
1 aa660 aa
SBP_bac_3PASHisKAHATPase_c
- Simplified architecture: SBP_bac_3 + PAS + HisKA + HATPase_c
- Raw architecture: SBP_bac_3[27-243] | PAS[313-419] | HisKA[438-501] | HATPase_c[546-656]
- Domain count: 4
- Matched identifier: HKOC_0871989
- Positioned domains: SBP_bac_3 27-243 ; PAS 313-419 ; HisKA 438-501 ; HATPase_c 546-656
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS13940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key