1 Response_reg#1
8-120 aa · 113 aa · 42.5% of protein
Raw token
Response_reg:8:4.27e-29:120:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS12955
Response regulator Spo0A family
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassRRTypeSpo0ALength266 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000005825#BPOF4_RS12955Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length266 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage217 / 266 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa266 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
156-259 aa · 104 aa · 39.1% of protein
Raw token
Spo0A_C:156:2.29e-66:259:104:104- Raw architecture: Response_reg:8:4.27e-29:120:113:111#Spo0A_C:156:2.29e-66:259:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000005825::NC_013791.2::G00032
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2563930-2564730Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_01460RefSeq proteinWP_012959640.1
Context group ID
GCF_000005825::NC_013791.2::G00032Context members
BPOF4_RS12955
Partner locus tags
BPOF4_RS12955
Partner old locus tags
BpOF4_01460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012959640.1Primary protein accession used for annex mappings.
UniProt accessionU6SQ30Primary UniProt accession resolved in the annex database.
UniProt IDU6SQ30_9BACIDisplay identifier provided by UniProt.
GO / PubMed9 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS12955Primary locus identifier stored in the genes table.
Old locus tagBpOF4_01460Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval2 563 930-2 564 730 nt801 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 563 930-2 564 730 ntGCF_000005825::NC_013791.2::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span2 563 930-2 564 730 nt801 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 563 930 nt2 564 730 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BPOF4_RS12955GCF_000005825#BPOF4_RS12955
RRSpo0ACurrent focus
2 563 930-2 564 730 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS12955The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0626453
Simplified PFAM architecture for RROC_0626453
PFAM domain coverage: 218 / 266 aa (82.0%)
1 aa266 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[6-119] | Spo0A_C[156-259]
- Domain count: 2
- Matched identifier: RROC_0626453
- Positioned domains: Response_reg 6-119 ; Response_reg 6-119 ; Spo0A_C 156-259 ; Spo0A_C 156-259
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS12955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key