1 PAS#1
165-261 aa · 97 aa · 15.7% of protein
Raw token
PAS:165:0.00000000844:261:101:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS12860
Histidine kinase, Classic
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassHKTypeClassicLength619 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000005825#BPOF4_RS12860Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
PASHisKAHATPase_c
Protein length619 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage368 / 619 aa (59.5%)Merged over positioned domains only.
Domain description2 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa619 aa
Domain-by-domain annotation4 items
2 PAS#2
279-389 aa · 111 aa · 17.9% of protein
Raw token
PAS:279:0.0000000000000811:389:111:1133 HisKA#3
409-466 aa · 58 aa · 9.4% of protein
Raw token
HisKA:409:0.00000000000125:466:61:644 HATPase_c#4
510-611 aa · 102 aa · 16.5% of protein
Raw token
HATPase_c:510:2.3e-25:611:105:109- Raw architecture: PAS:165:0.00000000844:261:101:113#PAS:279:0.0000000000000811:389:111:113#HisKA:409:0.00000000000125:466:61:64#HATPase_c:510:2.3e-25:611:105:109
- Domain description: 2 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000005825::NC_013791.2::G00031
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2544487-2546346Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_01365RefSeq proteinWP_012959623.1
Context group ID
GCF_000005825::NC_013791.2::G00031Context members
BPOF4_RS12860
Partner locus tags
BPOF4_RS12860
Partner old locus tags
BpOF4_01365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012959623.1Primary protein accession used for annex mappings.
UniProt accessionD3FUD9Primary UniProt accession resolved in the annex database.
UniProt IDD3FUD9_ALKPODisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS12860Primary locus identifier stored in the genes table.
Old locus tagBpOF4_01365Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval2 544 487-2 546 346 nt1 860 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 544 487-2 546 346 ntGCF_000005825::NC_013791.2::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span2 544 487-2 546 346 nt1 860 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 544 487 nt2 546 346 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BPOF4_RS12860GCF_000005825#BPOF4_RS12860
HKClassicCurrent focus
2 544 487-2 546 346 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS12860The current gene is the representative for this cluster.
PFAM architecturePAS_4 + PAS + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0974963
Simplified PFAM architecture for HKOC_0974963
PFAM domain coverage: 370 / 619 aa (59.8%)
1 aa619 aa
PAS_4PASHisKAHATPase_c
- Simplified architecture: PAS_4 + PAS + HisKA + HATPase_c
- Raw architecture: PAS_4[161-259] | PAS[278-389] | HisKA[409-465] | HATPase_c[510-611]
- Domain count: 4
- Matched identifier: HKOC_0974963
- Positioned domains: PAS_4 161-259 ; PAS 278-389 ; HisKA 409-465 ; HATPase_c 510-611
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS12860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key