1 Response_reg#1
14-115 aa · 102 aa · 28.1% of protein
Raw token
Response_reg:14:1.66e-22:115:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS11610
Response regulator, CheB family
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassRRTypeCheBLength363 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000005825#BPOF4_RS11610Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regCheB_methylest
Protein length363 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage283 / 363 aa (78.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 CheB_methylestSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa363 aa
Domain-by-domain annotation2 items
2 CheB_methylest#2
175-355 aa · 181 aa · 49.9% of protein
Raw token
CheB_methylest:175:1.28e-81:355:181:177- Raw architecture: Response_reg:14:1.66e-22:115:103:111#CheB_methylest:175:1.28e-81:355:181:177
- Domain description: 1 Response_reg,1 CheB_methylest
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000005825::NC_013791.2::G00029
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2299701-2300792Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_00080RefSeq proteinWP_012959368.1
Context group ID
GCF_000005825::NC_013791.2::G00029Context members
BPOF4_RS11610
Partner locus tags
BPOF4_RS11610
Partner old locus tags
BpOF4_00080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012959368.1Primary protein accession used for annex mappings.
UniProt accessionD3FT17Primary UniProt accession resolved in the annex database.
UniProt IDD3FT17_ALKPODisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS11610Primary locus identifier stored in the genes table.
Old locus tagBpOF4_00080Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval2 299 701-2 300 792 nt1 092 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 299 701-2 300 792 ntGCF_000005825::NC_013791.2::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span2 299 701-2 300 792 nt1 092 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 299 701 nt2 300 792 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BPOF4_RS11610GCF_000005825#BPOF4_RS11610
RRCheBCurrent focus
2 299 701-2 300 792 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS11610The current gene is the representative for this cluster.
PFAM architectureResponse_reg + CheB_methylest2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0453275
Simplified PFAM architecture for RROC_0453275
PFAM domain coverage: 287 / 363 aa (79.1%)
1 aa363 aa
Response_regCheB_methylest
- Simplified architecture: Response_reg + CheB_methylest
- Raw architecture: Response_reg[14-119] | CheB_methylest[175-355]
- Domain count: 2
- Matched identifier: RROC_0453275
- Positioned domains: Response_reg 14-119 ; Response_reg 14-119 ; CheB_methylest 175-355 ; CheB_methylest 175-355
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS11610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key