1 HAMP#1
165-234 aa · 70 aa · 15.2% of protein
Raw token
HAMP:165:0.00000000155:234:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS10310
Histidine kinase, Classic
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassHKTypeClassicLength461 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000005825#BPOF4_RS10310Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length461 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 461 aa (53.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa461 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-304 aa · 67 aa · 14.5% of protein
Raw token
HisKA:238:0.0000000000000034:304:67:643 HATPase_c#3
351-461 aa · 111 aa · 24.1% of protein
Raw token
HATPase_c:351:2.79e-32:461:111:109- Raw architecture: HAMP:165:0.00000000155:234:70:69#HisKA:238:0.0000000000000034:304:67:64#HATPase_c:351:2.79e-32:461:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000005825::NC_013791.2::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2043756-2045834Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_18480RefSeq proteinWP_012959099.1
Context group ID
GCF_000005825::NC_013791.2::G00027Context members
BPOF4_RS10310BPOF4_RS10315
Partner locus tags
BPOF4_RS10310BPOF4_RS10315
Partner old locus tags
BpOF4_18480BpOF4_18485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012959099.1Primary protein accession used for annex mappings.
UniProt accessionD3FSA2Primary UniProt accession resolved in the annex database.
UniProt IDD3FSA2_ALKPODisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS10310Primary locus identifier stored in the genes table.
Old locus tagBpOF4_18480Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval2 043 756-2 045 141 nt1 386 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 043 756-2 045 834 ntGCF_000005825::NC_013791.2::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span2 043 756-2 045 834 nt2 079 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 043 756 nt2 045 834 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BPOF4_RS10310GCF_000005825#BPOF4_RS10310
HKClassicCurrent focus
2 043 756-2 045 141 nt · Reverse (-)
BPOF4_RS10315GCF_000005825#BPOF4_RS10315
RROmpR
2 045 142-2 045 834 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS10310The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1820190
Simplified PFAM architecture for HKOC_1820190
PFAM domain coverage: 228 / 461 aa (49.5%)
1 aa461 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[182-233] | HisKA[239-304] | HATPase_c[351-460]
- Domain count: 3
- Matched identifier: HKOC_1820190
- Positioned domains: HAMP 182-233 ; HisKA 239-304 ; HATPase_c 351-460
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS10310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key