1 Response_reg#1
5-113 aa · 109 aa · 22.4% of protein
Raw token
Response_reg:5:0.0000000803:113:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS08635
Response regulator, unclassified
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassRRTypeunclassifiedLength486 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000005825#BPOF4_RS08635Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length486 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage143 / 486 aa (29.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa486 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
401-434 aa · 34 aa · 7.0% of protein
Raw token
HTH_AraC:401:0.00000231:434:34:42- Raw architecture: Response_reg:5:0.0000000803:113:115:111#HTH_AraC:401:0.00000231:434:34:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000005825::NC_013791.2::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1718837-1720297Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_16685RefSeq proteinWP_012958742.1
Context group ID
GCF_000005825::NC_013791.2::G00023Context members
BPOF4_RS08635
Partner locus tags
BPOF4_RS08635
Partner old locus tags
BpOF4_16685
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012958742.1Primary protein accession used for annex mappings.
UniProt accessionD3FQL0Primary UniProt accession resolved in the annex database.
UniProt IDD3FQL0_ALKPODisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS08635Primary locus identifier stored in the genes table.
Old locus tagBpOF4_16685Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval1 718 837-1 720 297 nt1 461 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 718 837-1 720 297 ntGCF_000005825::NC_013791.2::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span1 718 837-1 720 297 nt1 461 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 718 837 nt1 720 297 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BPOF4_RS08635GCF_000005825#BPOF4_RS08635
RRunclassifiedCurrent focus
1 718 837-1 720 297 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS08635The current gene is the representative for this cluster.
PFAM architectureHTH_181 domain in the representative PFAM annotation.
PFAM architecture for RROC_0172665
Simplified PFAM architecture for RROC_0172665
PFAM domain coverage: 78 / 486 aa (16.0%)
1 aa486 aa
HTH_18
- Simplified architecture: HTH_18
- Raw architecture: HTH_18[407-484]
- Domain count: 1
- Matched identifier: RROC_0172665
- Positioned domains: HTH_18 407-484 ; HTH_18 407-484
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS08635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key