1 CheW#1
18-153 aa · 136 aa · 45.0% of protein
Raw token
CheW:18:3.1e-38:153:137:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS07780
Response regulator CheV family
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassRRTypeCheVLength302 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000005825#BPOF4_RS07780Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage256 / 302 aa (84.8%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa302 aa
Domain-by-domain annotation2 items
2 Response_reg#2
177-296 aa · 120 aa · 39.7% of protein
Raw token
Response_reg:177:4.96e-23:296:124:111- Raw architecture: CheW:18:3.1e-38:153:137:138#Response_reg:177:4.96e-23:296:124:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000005825::NC_013791.2::G00022
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1549079-1549987Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_15735RefSeq proteinWP_012958558.1
Context group ID
GCF_000005825::NC_013791.2::G00022Context members
BPOF4_RS07780
Partner locus tags
BPOF4_RS07780
Partner old locus tags
BpOF4_15735
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012958558.1Primary protein accession used for annex mappings.
UniProt accessionD3G0N4Primary UniProt accession resolved in the annex database.
UniProt IDD3G0N4_ALKPODisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS07780Primary locus identifier stored in the genes table.
Old locus tagBpOF4_15735Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval1 549 079-1 549 987 nt909 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 549 079-1 549 987 ntGCF_000005825::NC_013791.2::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span1 549 079-1 549 987 nt909 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 549 079 nt1 549 987 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BPOF4_RS07780GCF_000005825#BPOF4_RS07780
RRCheVCurrent focus
1 549 079-1 549 987 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS07780The current gene is the representative for this cluster.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0568506
Simplified PFAM architecture for RROC_0568506
PFAM domain coverage: 254 / 302 aa (84.1%)
1 aa302 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[18-151] | Response_reg[177-296]
- Domain count: 2
- Matched identifier: RROC_0568506
- Positioned domains: CheW 18-151 ; CheW 18-151 ; Response_reg 177-296 ; Response_reg 177-296
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS07780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key