1 HAMP#1
177-246 aa · 70 aa · 11.7% of protein
Raw token
HAMP:177:6.69e-16:246:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS07150
Histidine kinase, Classic
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassHKTypeClassicLength599 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000005825#BPOF4_RS07150Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HAMPPASHisKAHATPase_c
Protein length599 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage350 / 599 aa (58.4%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa599 aa
Domain-by-domain annotation4 items
2 PAS#2
256-357 aa · 102 aa · 17.0% of protein
Raw token
PAS:256:0.00000436:357:116:1133 HisKA#3
367-433 aa · 67 aa · 11.2% of protein
Raw token
HisKA:367:2.26e-18:433:67:644 HATPase_c#4
480-590 aa · 111 aa · 18.5% of protein
Raw token
HATPase_c:480:1.66e-33:590:111:109- Raw architecture: HAMP:177:6.69e-16:246:70:69#PAS:256:0.00000436:357:116:113#HisKA:367:2.26e-18:433:67:64#HATPase_c:480:1.66e-33:590:111:109
- Domain description: 1 HAMP,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000005825::NC_013791.2::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1417609-1420124Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_15065RefSeq proteinWP_012958424.1
Context group ID
GCF_000005825::NC_013791.2::G00021Context members
BPOF4_RS07145BPOF4_RS07150
Partner locus tags
BPOF4_RS07145BPOF4_RS07150
Partner old locus tags
BpOF4_15060BpOF4_15065
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012958424.1Primary protein accession used for annex mappings.
UniProt accessionD3FZX7Primary UniProt accession resolved in the annex database.
UniProt IDD3FZX7_ALKPODisplay identifier provided by UniProt.
GO / PubMed7 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS07150Primary locus identifier stored in the genes table.
Old locus tagBpOF4_15065Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval1 418 325-1 420 124 nt1 800 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 417 609-1 420 124 ntGCF_000005825::NC_013791.2::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span1 417 609-1 420 124 nt2 516 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 417 609 nt1 420 124 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BPOF4_RS07145GCF_000005825#BPOF4_RS07145
RROmpR
1 417 609-1 418 325 nt · Forward (+)
BPOF4_RS07150GCF_000005825#BPOF4_RS07150
HKClassicCurrent focus
1 418 325-1 420 124 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS07150The current gene is the representative for this cluster.
PFAM architectureHisK_sensor + HAMP + PAS + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1057220
Simplified PFAM architecture for HKOC_1057220
PFAM domain coverage: 459 / 599 aa (76.6%)
1 aa599 aa
HisK_sensorHAMPPASHisKAHATPase_c
- Simplified architecture: HisK_sensor + HAMP + PAS + HisKA + HATPase_c
- Raw architecture: HisK_sensor[37-164] | HAMP[194-245] | PAS[256-357] | HisKA[367-433] | HATPase_c[480-589]
- Domain count: 5
- Matched identifier: HKOC_1057220
- Positioned domains: HisK_sensor 37-164 ; HAMP 194-245 ; PAS 256-357 ; HisKA 367-433 ; HATPase_c 480-589
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS07150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key