1 HAMP#1
190-259 aa · 70 aa · 7.3% of protein
Raw token
HAMP:190:0.000000000223:259:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS06635
Histidine kinase, Hybrid
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassHKTypeHybridLength960 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000005825#BPOF4_RS06635Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_cResponse_reg
Protein length960 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage369 / 960 aa (38.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa960 aa
Domain-by-domain annotation4 items
2 HisKA#2
581-647 aa · 67 aa · 7.0% of protein
Raw token
HisKA:581:3.15e-20:647:67:643 HATPase_c#3
691-801 aa · 111 aa · 11.6% of protein
Raw token
HATPase_c:691:9.51e-34:801:111:1094 Response_reg#4
818-938 aa · 121 aa · 12.6% of protein
Raw token
Response_reg:818:0.000000000567:938:123:111- Raw architecture: HAMP:190:0.000000000223:259:70:69#HisKA:581:3.15e-20:647:67:64#HATPase_c:691:9.51e-34:801:111:109#Response_reg:818:0.000000000567:938:123:111
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000005825::NC_013791.2::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1321372-1324609Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_14535RefSeq proteinWP_012958318.1
Context group ID
GCF_000005825::NC_013791.2::G00020Context members
BPOF4_RS06630BPOF4_RS06635
Partner locus tags
BPOF4_RS06630BPOF4_RS06635
Partner old locus tags
BpOF4_14530BpOF4_14535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012958318.1Primary protein accession used for annex mappings.
UniProt accessionD3FZ87Primary UniProt accession resolved in the annex database.
UniProt IDD3FZ87_ALKPODisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS06635Primary locus identifier stored in the genes table.
Old locus tagBpOF4_14535Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval1 321 727-1 324 609 nt2 883 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 321 372-1 324 609 ntGCF_000005825::NC_013791.2::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span1 321 372-1 324 609 nt3 238 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 321 372 nt1 324 609 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BPOF4_RS06630GCF_000005825#BPOF4_RS06630
RRCheY
1 321 372-1 321 734 nt · Forward (+)
BPOF4_RS06635GCF_000005825#BPOF4_RS06635
HKHybridCurrent focus
1 321 727-1 324 609 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS06635The current gene is the representative for this cluster.
PFAM architecture4HB_MCP_1 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0317683
Simplified PFAM architecture for HKOC_0317683
PFAM domain coverage: 463 / 960 aa (48.2%)
1 aa960 aa
4HB_MCP_1HisKAHATPase_cResponse_reg
- Simplified architecture: 4HB_MCP_1 + HisKA + HATPase_c + Response_reg
- Raw architecture: 4HB_MCP_1[12-174] | HisKA[581-647] | HATPase_c[691-802] | Response_reg[818-938]
- Domain count: 4
- Matched identifier: HKOC_0317683
- Positioned domains: 4HB_MCP_1 12-174 ; HisKA 581-647 ; HATPase_c 691-802 ; Response_reg 818-938
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS06635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key