1 Response_reg#1
2-110 aa · 109 aa · 47.8% of protein
Raw token
Response_reg:2:4.27e-37:110:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS06320
Response regulator OmpR family
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000005825#BPOF4_RS06320Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 228 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-224 aa · 72 aa · 31.6% of protein
Raw token
Trans_reg_C:153:1.46e-30:224:75:77- Raw architecture: Response_reg:2:4.27e-37:110:110:111#Trans_reg_C:153:1.46e-30:224:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000005825::NC_013791.2::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1256701-1258805Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_14195RefSeq proteinWP_180316879.1
Context group ID
GCF_000005825::NC_013791.2::G00017Context members
BPOF4_RS06315BPOF4_RS06320
Partner locus tags
BPOF4_RS06315BPOF4_RS06320
Partner old locus tags
BpOF4_14190BpOF4_14195
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_180316879.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS06320Primary locus identifier stored in the genes table.
Old locus tagBpOF4_14195Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval1 258 119-1 258 805 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 256 701-1 258 805 ntGCF_000005825::NC_013791.2::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span1 256 701-1 258 805 nt2 105 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 256 701 nt1 258 805 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BPOF4_RS06315GCF_000005825#BPOF4_RS06315
HKClassic
1 256 701-1 258 122 nt · Reverse (-)
BPOF4_RS06320GCF_000005825#BPOF4_RS06320
RROmpRCurrent focus
1 258 119-1 258 805 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS06320The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1301503
Simplified PFAM architecture for RROC_1301503
PFAM domain coverage: 181 / 228 aa (79.4%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-110] | Trans_reg_C[153-224]
- Domain count: 2
- Matched identifier: RROC_1301503
- Positioned domains: Response_reg 2-110 ; Response_reg 2-110 ; Trans_reg_C 153-224 ; Trans_reg_C 153-224
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS06320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key