1 GAF#1
98-235 aa · 138 aa · 27.7% of protein
Raw token
GAF:98:0.000000000000897:235:140:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS05205
Histidine kinase, Classic
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassHKTypeClassicLength499 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000005825#BPOF4_RS05205Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
GAFHisKAHATPase_c
Protein length499 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage315 / 499 aa (63.1%)Merged over positioned domains only.
Domain description1 GAF,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa499 aa
Domain-by-domain annotation3 items
2 HisKA#2
271-339 aa · 69 aa · 13.8% of protein
Raw token
HisKA:271:2.8e-17:339:69:643 HATPase_c#3
388-495 aa · 108 aa · 21.6% of protein
Raw token
HATPase_c:388:6.16e-32:495:108:109- Raw architecture: GAF:98:0.000000000000897:235:140:133#HisKA:271:2.8e-17:339:69:64#HATPase_c:388:6.16e-32:495:108:109
- Domain description: 1 GAF,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000005825::NC_013791.2::G00015
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1048444-1049943Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_13085RefSeq proteinWP_158305555.1
Context group ID
GCF_000005825::NC_013791.2::G00015Context members
BPOF4_RS05205
Partner locus tags
BPOF4_RS05205
Partner old locus tags
BpOF4_13085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_158305555.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS05205Primary locus identifier stored in the genes table.
Old locus tagBpOF4_13085Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval1 048 444-1 049 943 nt1 500 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 048 444-1 049 943 ntGCF_000005825::NC_013791.2::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span1 048 444-1 049 943 nt1 500 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 048 444 nt1 049 943 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BPOF4_RS05205GCF_000005825#BPOF4_RS05205
HKClassicCurrent focus
1 048 444-1 049 943 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS05205The current gene is the representative for this cluster.
PFAM architectureGAF_2 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1481004
Simplified PFAM architecture for HKOC_1481004
PFAM domain coverage: 318 / 499 aa (63.7%)
1 aa499 aa
GAF_2HisKAHATPase_c
- Simplified architecture: GAF_2 + HisKA + HATPase_c
- Raw architecture: GAF_2[97-236] | HisKA[271-339] | HATPase_c[388-496]
- Domain count: 3
- Matched identifier: HKOC_1481004
- Positioned domains: GAF_2 97-236 ; HisKA 271-339 ; HATPase_c 388-496
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS05205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key