1 HAMP#1
52-122 aa · 71 aa · 19.4% of protein
Raw token
HAMP:52:0.0000000121:122:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS03745
Histidine kinase, Classic
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassHKTypeClassicLength366 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000005825#BPOF4_RS03745Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HAMPHisKA_3HATPase_c
Protein length366 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 366 aa (62.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa366 aa
Domain-by-domain annotation3 items
2 HisKA_3#2
149-212 aa · 64 aa · 17.5% of protein
Raw token
HisKA_3:149:5.49e-18:212:68:683 HATPase_c#3
249-341 aa · 93 aa · 25.4% of protein
Raw token
HATPase_c:249:0.000000000000119:341:108:109- Raw architecture: HAMP:52:0.0000000121:122:71:69#HisKA_3:149:5.49e-18:212:68:68#HATPase_c:249:0.000000000000119:341:108:109
- Domain description: 1 HAMP,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000005825::NC_013791.2::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span750352-752059Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_11560RefSeq proteinWP_041822231.1
Context group ID
GCF_000005825::NC_013791.2::G00009Context members
BPOF4_RS03745BPOF4_RS03750
Partner locus tags
BPOF4_RS03745BPOF4_RS03750
Partner old locus tags
BpOF4_11560BpOF4_11565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_041822231.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS03745Primary locus identifier stored in the genes table.
Old locus tagBpOF4_11560Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval750 352-751 452 nt1 101 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span750 352-752 059 ntGCF_000005825::NC_013791.2::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span750 352-752 059 nt1 708 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
750 352 nt752 059 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BPOF4_RS03745GCF_000005825#BPOF4_RS03745
HKClassicCurrent focus
750 352-751 452 nt · Forward (+)
BPOF4_RS03750GCF_000005825#BPOF4_RS03750
RRNarL
751 427-752 059 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS03745The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2711906
Simplified PFAM architecture for HKOC_2711906
PFAM domain coverage: 203 / 366 aa (55.5%)
1 aa366 aa
HAMPHisKA_3HATPase_c
- Simplified architecture: HAMP + HisKA_3 + HATPase_c
- Raw architecture: HAMP[74-122] | HisKA_3[149-211] | HATPase_c[250-340]
- Domain count: 3
- Matched identifier: HKOC_2711906
- Positioned domains: HAMP 74-122 ; HisKA_3 149-211 ; HATPase_c 250-340
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS03745
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key