1 HAMP#1
149-222 aa · 74 aa · 16.1% of protein
Raw token
HAMP:149:0.00000192:222:74:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPOF4_RS03435
Histidine kinase, Classic
Alkalihalophilus pseudofirmus OF4 · GCF_000005825
ClassHKTypeClassicLength460 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000005825#BPOF4_RS03435Stable P2CS identifier used across views.
GenomeGCF_000005825Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length460 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 460 aa (53.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa460 aa
Domain-by-domain annotation3 items
2 HisKA#2
226-291 aa · 66 aa · 14.3% of protein
Raw token
HisKA:226:0.00000000000000668:291:66:643 HATPase_c#3
335-441 aa · 107 aa · 23.3% of protein
Raw token
HATPase_c:335:2.6e-33:441:108:109- Raw architecture: HAMP:149:0.00000192:222:74:69#HisKA:226:0.00000000000000668:291:66:64#HATPase_c:335:2.6e-33:441:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000005825::NC_013791.2::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span692576-694656Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBpOF4_11240RefSeq proteinWP_012957667.1
Context group ID
GCF_000005825::NC_013791.2::G00007Context members
BPOF4_RS03430BPOF4_RS03435
Partner locus tags
BPOF4_RS03430BPOF4_RS03435
Partner old locus tags
BpOF4_11235BpOF4_11240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012957667.1Primary protein accession used for annex mappings.
UniProt accessionD3FVA0Primary UniProt accession resolved in the annex database.
UniProt IDD3FVA0_ALKPODisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPOF4_RS03435Primary locus identifier stored in the genes table.
Old locus tagBpOF4_11240Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_013791.2Sequence record reported by the local genomic context database.
Genomic interval693 274-694 656 nt1 383 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span692 576-694 656 ntGCF_000005825::NC_013791.2::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000005825::NC_013791.2::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_013791.2All displayed genes belong to this local TCS context.
Neighborhood span692 576-694 656 nt2 081 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
692 576 nt694 656 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BPOF4_RS03430GCF_000005825#BPOF4_RS03430
RROmpR
692 576-693 277 nt · Forward (+)
BPOF4_RS03435GCF_000005825#BPOF4_RS03435
HKClassicCurrent focus
693 274-694 656 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS03435The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1833571
Simplified PFAM architecture for HKOC_1833571
PFAM domain coverage: 173 / 460 aa (37.6%)
1 aa460 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[227-291] | HATPase_c[335-442]
- Domain count: 2
- Matched identifier: HKOC_1833571
- Positioned domains: HisKA 227-291 ; HATPase_c 335-442
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS03435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 398 511 · GCF_000005825
AssemblyASM582v2 · Complete Genomehaploid
Genome composition4 249 248 bp · 40,0% GCAlkalihalophilus pseudofirmus OF4
Signal transduction countsGenes 76 · HK 40 · RR 36CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key