1 HAMP#1
162-235 aa · 74 aa · 15.3% of protein
Raw token
HAMP:162:0.0000000000248:235:74:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS26570
Histidine kinase, Classic
Bacillus mycoides DSM 2048 · GCF_000003925
ClassHKTypeClassicLength484 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000003925#BMYCO0001_RS26570Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length484 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 484 aa (51.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
246-313 aa · 68 aa · 14.0% of protein
Raw token
HisKA:246:0.000000000000102:313:68:643 HATPase_c#3
364-470 aa · 107 aa · 22.1% of protein
Raw token
HATPase_c:364:4.62e-29:470:107:109- Raw architecture: HAMP:162:0.0000000000248:235:74:69#HisKA:246:0.000000000000102:313:68:64#HATPase_c:364:4.62e-29:470:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000003925::NZ_CM000742.1::G00077
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5247165-5249299Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_53940RefSeq proteinWP_002128187.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00077Context members
BMYCO0001_RS26565BMYCO0001_RS26570
Partner locus tags
BMYCO0001_RS26565BMYCO0001_RS26570
Partner old locus tags
bmyco0001_53930bmyco0001_53940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002128187.1Primary protein accession used for annex mappings.
UniProt accessionJ8EYV5Primary UniProt accession resolved in the annex database.
UniProt IDJ8EYV5_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS26570Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_53940Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval5 247 845-5 249 299 nt1 455 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 247 165-5 249 299 ntGCF_000003925::NZ_CM000742.1::G00077
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00077Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span5 247 165-5 249 299 nt2 135 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 247 165 nt5 249 299 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYCO0001_RS26565GCF_000003925#BMYCO0001_RS26565
RROmpR
5 247 165-5 247 845 nt · Forward (+)
BMYCO0001_RS26570GCF_000003925#BMYCO0001_RS26570
HKClassicCurrent focus
5 247 845-5 249 299 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS26570The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1583983
Simplified PFAM architecture for HKOC_1583983
PFAM domain coverage: 224 / 484 aa (46.3%)
1 aa484 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-234] | HisKA[247-312] | HATPase_c[364-470]
- Domain count: 3
- Matched identifier: HKOC_1583983
- Positioned domains: HAMP 184-234 ; HisKA 247-312 ; HATPase_c 364-470
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS26570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key