1 Response_reg#1
5-114 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:5:1.44e-37:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BMYCO0001_RS11225
Response regulator OmpR family
Bacillus mycoides DSM 2048 · GCF_000003925
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000003925#BMYCO0001_RS11225Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 231 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.3% of protein
Raw token
Trans_reg_C:153:3.53e-31:229:77:77- Raw architecture: Response_reg:5:1.44e-37:114:111:111#Trans_reg_C:153:3.53e-31:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000003925::NZ_CM000742.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2247829-2249671Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbmyco0001_22650RefSeq proteinWP_002016575.1
Context group ID
GCF_000003925::NZ_CM000742.1::G00033Context members
BMYCO0001_RS11220BMYCO0001_RS11225
Partner locus tags
BMYCO0001_RS11220BMYCO0001_RS11225
Partner old locus tags
bmyco0001_22640bmyco0001_22650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002016575.1Primary protein accession used for annex mappings.
UniProt accessionR8HNH9Primary UniProt accession resolved in the annex database.
UniProt IDR8HNH9_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBMYCO0001_RS11225Primary locus identifier stored in the genes table.
Old locus tagbmyco0001_22650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000742.1Sequence record reported by the local genomic context database.
Genomic interval2 248 976-2 249 671 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 247 829-2 249 671 ntGCF_000003925::NZ_CM000742.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000003925::NZ_CM000742.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000742.1All displayed genes belong to this local TCS context.
Neighborhood span2 247 829-2 249 671 nt1 843 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 247 829 nt2 249 671 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BMYCO0001_RS11220GCF_000003925#BMYCO0001_RS11220
HKClassic
2 247 829-2 248 986 nt · Reverse (-)
BMYCO0001_RS11225GCF_000003925#BMYCO0001_RS11225
RROmpRCurrent focus
2 248 976-2 249 671 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS11225The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1157708
Simplified PFAM architecture for RROC_1157708
PFAM domain coverage: 185 / 231 aa (80.1%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[154-228]
- Domain count: 2
- Matched identifier: RROC_1157708
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 154-228 ; Trans_reg_C 154-228
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS11225
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 146 total members. Page 1 / 3.
GCF_000003925#BMYCO0001_RS11225 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 526 997 · GCF_000003925
AssemblyASM392v1 · Chromosomehaploid
Genome composition5 561 906 bp · 35,0% GCBacillus mycoides DSM 2048
Signal transduction countsGenes 129 · HK 67 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
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