P2CS-Web

Cohnella sp.

Bacteria · Bacillota · Bacilli · Bacillales · Paenibacillaceae · Cohnella

Strain: T2.bin.247

TCS census

Genome-level counts from the current P2CS annotation tables

All genes515Total predicted proteins linked to this genome record.

HK257Histidine kinase predictions in the genes table.

RR255Response regulator predictions in the genes table.

CheA4CheA-like kinase predictions in the genes table.

PP3Phosphatase predictions in the genes table.

Genome overview

Curated genome metadata from the imported catalog and Cheops-linked sources

Genome IDGCF_040392865Stable genome identifier used across P2CS views.

Genome nameCohnella sp.NCBI organism name imported through the genome catalogue.

Strain / isolateT2.bin.247Infraspecific name when supplied by the source assembly metadata.

Taxon ID1883426NCBI taxonomic identifier linked to the imported genome catalog.

AssemblyASM4039286v1 · ContigNo RefSeq category available for this record.

Composition8,68 Mb · 54,0% GCGenome size and GC content when available in the catalog.

External recordsPRJNA224116 · SAMN39477497Cohnella sp.

Taxonomy snapshotBacteria · Bacillota · Bacilli · Bacillales · Paenibacillaceae · CohnellaUnknown

genome_ANI

ANI and taxonomy consistency checks

Taxonomy checkOK

Best-match statusgenus-match

Best speciesCohnella cellulosilytica

Best type assemblyGCA_042431195.1

Best type categorytype

Best ANI85.70%

Best qcov34,1%

Best scov35,6%

Declared assemblyno-type

Declared categoryno-type

Excluded from RefSeqderived from metagenome

genome_checkM

Completeness and contamination estimates

Completeness90,8%

Contamination13,6%

Marker setCohnella

genome_genbank

Assembly and annotation metadata

Organism nameCohnella sp.

WGS masterJBEBVJ000000000.1

Version statuslatest

Release typeMajor

Genome representationFull

Sequence release2024-06-27

SubmitterMax Planck Institute for Biology

Groupbacteria

Ungapped size8 678 572

Replicons0

Scaffolds434

Contigs434

Total genes0

Protein-coding0

Non-coding0

PubMed38879542

Genome circular map

Circos-like overview of the selected replicon with central GC, strand-specific genes, zoomable coordinates, and TCS organization markers

GenomeGCF_040392865

RepliconNZ_JBEBVJ010000001.1

Length97,2 kb

Tracks92 genes · 5 TCS

Replicon

Zoom

Genes on + strand Genes on - strand HK RR CheA PP/Hpt GC% GC skew Cumulative GC skew Composition baseline

Context Orphan (1) Pair (2) Triad (0) Tetrad (0) Pentad (0) Pentad+ (0) Not in context (0)

Linear chromosome and composition views

Linear overview of the selected replicon, with strand-separated genes and composition plots aligned on the same genomic coordinate system.

Genes on + strand Genes on - strand HK RR CheA PP/Hpt

Sources

GFF: GCF_040392865.gff.gz · Sequence: GCF_040392865.1_ASM4039286v1_genomic.fna.gz

TCS Organization

Click a count to filter the gene list below

Orphan	Pair	Triad	Tetrad	Pentad	Pentad+	Not in context
63 (63 genes)	208 (416 genes)	6 (18 genes)	1 (4 genes)	0 (0 gene)	0 (0 gene)	14 (14 genes)

Not in context = predicted HK, RR, and PP genes missing from the TCS context database.

Gene distribution

Total proteins: 515

HK257proteins in this genome

P2CS Predicted Histidine Kinases

P2CS Predicted Histidine Kinases (257 proteins across 4 families) · Phylogenetic Tree · Data Heatmap

Genome total 257Database total 12 517 906Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

RR255proteins in this genome

P2CS Predicted Response Regulators

P2CS Predicted Response Regulators (255 proteins across 11 families) · Phylogenetic Tree · Data Heatmap

Genome total 255Database total 12 774 395Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

PP3proteins in this genome

P2CS Predicted PP / Hpt Proteins

P2CS Predicted PP / Hpt Proteins (3 proteins across 1 families) · Phylogenetic Tree · Data Heatmap

Genome total 3Database total 371 352Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

P2CS shortcuts

Classic entry points plus a collapsible genome protein list at the end of the page

All genes HK RR CheA PP Orphan Pair Triad Pentad+

Genome proteins

Full genome protein list with the same filters, grouped contexts, and links to the browser or gene detail pages.

Open this section to load the genome protein list.

Selected gene

Inline mode is active

Choose a gene from the list above to display its details below the genome sheet.