P2CS-Web

Archangium lipolyticum

Bacteria · Myxococcota · Myxococcia · Myxococcales · Archangiaceae · Archangium

Strain: CY-1

TCS census

Genome-level counts from the current P2CS annotation tables

All genes457Total predicted proteins linked to this genome record.

HK295Histidine kinase predictions in the genes table.

RR157Response regulator predictions in the genes table.

CheA11CheA-like kinase predictions in the genes table.

PP5Phosphatase predictions in the genes table.

Genome overview

Curated genome metadata from the imported catalog and Cheops-linked sources

Genome IDGCF_024623785Stable genome identifier used across P2CS views.

Genome nameArchangium lipolyticumNCBI organism name imported through the genome catalogue.

Strain / isolateCY-1Infraspecific name when supplied by the source assembly metadata.

Taxon ID2970465NCBI taxonomic identifier linked to the imported genome catalog.

AssemblyASM2462378v1 · Contigreference genome

Composition12,59 Mb · 68,5% GCGenome size and GC content when available in the catalog.

External recordsPRJNA224116 · SAMN30160696Archangium lipolyticum

Taxonomy snapshotBacteria · Myxococcota · Myxococcia · Myxococcales · Archangiaceae · ArchangiumUnknown

genome_ANI

ANI and taxonomy consistency checks

Taxonomy checkInconclusive

Best-match statusbelow-threshold-mismatch

Best speciesArchangium lansingense

Best type assemblyGCA_026626635.1

Best type categorytype

Best ANI86.61%

Best qcov50,4%

Best scov45,9%

Declared assemblysame

genome_checkM

Completeness and contamination estimates

Completeness98,4%

Contamination4,7%

Marker setMyxococcales

genome_genbank

Assembly and annotation metadata

Organism nameArchangium lipolyticum

Infraspecificstrain=CY-1

WGS masterJANKBZ000000000.1

Version statuslatest

Release typeMajor

Genome representationFull

Sequence release2022-08-10

SubmitterInstitute of Microbiology, Guangdong Academy of Sciences

Type materialassembly from type material

Groupbacteria

Ungapped size12 594 933

Replicons0

Scaffolds75

Contigs75

Total genes0

Protein-coding0

Non-coding0

Genome circular map

Circos-like overview of the selected replicon with central GC, strand-specific genes, zoomable coordinates, and TCS organization markers

GenomeGCF_024623785

RepliconNZ_JANKBZ010000001.1

Length969,3 kb

Tracks729 genes · 22 TCS

Replicon

Zoom

Genes on + strand Genes on - strand HK RR CheA PP/Hpt GC% GC skew Cumulative GC skew Composition baseline

Context Orphan (13) Pair (2) Triad (1) Tetrad (0) Pentad (0) Pentad+ (0) Not in context (1)

Linear chromosome and composition views

Linear overview of the selected replicon, with strand-separated genes and composition plots aligned on the same genomic coordinate system.

Genes on + strand Genes on - strand HK RR CheA PP/Hpt

Sources

GFF: GCF_024623785.gff.gz · Sequence: GCF_024623785.1_ASM2462378v1_genomic.fna.gz

TCS Organization

Click a count to filter the gene list below

Orphan	Pair	Triad	Tetrad	Pentad	Pentad+	Not in context
245 (245 genes)	58 (116 genes)	11 (33 genes)	2 (8 genes)	0 (0 gene)	0 (0 gene)	55 (55 genes)

Not in context = predicted HK, RR, and PP genes missing from the TCS context database.

Gene distribution

Total proteins: 457

HK295proteins in this genome

P2CS Predicted Histidine Kinases

P2CS Predicted Histidine Kinases (295 proteins across 3 families) · Phylogenetic Tree · Data Heatmap

Genome total 295Database total 12 517 906Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

RR157proteins in this genome

P2CS Predicted Response Regulators

P2CS Predicted Response Regulators (157 proteins across 14 families) · Phylogenetic Tree · Data Heatmap

Genome total 157Database total 12 774 395Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

PP5proteins in this genome

P2CS Predicted PP / Hpt Proteins

P2CS Predicted PP / Hpt Proteins (5 proteins across 2 families) · Phylogenetic Tree · Data Heatmap

Genome total 5Database total 371 352Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

P2CS shortcuts

Classic entry points plus a collapsible genome protein list at the end of the page

All genes HK RR CheA PP Orphan Pair Triad Pentad+

Genome proteins

Full genome protein list with the same filters, grouped contexts, and links to the browser or gene detail pages.

Open this section to load the genome protein list.

Selected gene

Inline mode is active

Choose a gene from the list above to display its details below the genome sheet.