P2CS-Web

Two-component systems, rebuilt for exploration

Eisenbergiella massiliensis

Bacteria · Bacillota · Clostridia · Lachnospirales · Lachnospiraceae · Eisenbergiella

TCS census

Genome-level counts from the current P2CS annotation tables

All genes161Total predicted proteins linked to this genome record.
HK74Histidine kinase predictions in the genes table.
RR79Response regulator predictions in the genes table.
CheA0CheA-like kinase predictions in the genes table.
PP8Phosphatase predictions in the genes table.

Genome overview

Curated genome metadata from the imported catalog and Cheops-linked sources

Genome IDGCF_022781285Stable genome identifier used across P2CS views.
Taxon ID1720294NCBI taxonomic identifier linked to the imported genome catalog.
AssemblyASM2278128v1 · ContigNo RefSeq category available for this record.
Composition5,34 Mb · 48,5% GCGenome size and GC content when available in the catalog.
External recordsPRJNA224116 · SAMN26525548Eisenbergiella massiliensis
Taxonomy snapshotBacteria · Bacillota · Clostridia · Lachnospirales · Lachnospiraceae · EisenbergiellaBacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella

genome_ANI

ANI and taxonomy consistency checks

Taxonomy checkOK
Best-match statusspecies-match
Best speciesEisenbergiella massiliensis
Best type assemblyGCA_900243045.1
Best type categorytype
Best ANI97.77%
Best qcov78,9%
Best scov59,3%
Declared assemblyGCA_900243045.1
Declared organismEisenbergiella massiliensis
Declared categorytype
Declared ANI97.77%
Excluded from RefSeqderived from metagenome

genome_checkM

Completeness and contamination estimates

Completeness92,0%
Contamination2,2%
Marker setLachnospiraceae

genome_genbank

Assembly and annotation metadata

Organism nameEisenbergiella massiliensis
WGS masterJALETP000000000.1
Version statuslatest
Release typeMajor
Genome representationFull
Sequence release2022-04-01
SubmitterAAFC
Groupbacteria
Ungapped size5 340 195
Replicons0
Scaffolds362
Contigs362
Annotation providerNCBI
Annotation nameNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation date2022-03-26
Total genes5229
Protein-coding4983
Non-coding51

Genome circular map

Circos-like chromosome overview with gene and TCS coordinates

Genome annotation GFF not found for this genome.

TCS Organization

Click a count to filter the gene list below

OrphanPairTriadTetradPentadPentad+Not in context
43 (43 genes)47 (94 genes)0 (0 gene)1 (4 genes)0 (0 gene)0 (0 gene)20 (20 genes)

Not in context = predicted HK, RR, and PP genes missing from the TCS context database.

Gene distribution

Total proteins: 161

Distribution chart type
HK74proteins in this genome

P2CS Predicted Histidine Kinases

P2CS Predicted Histidine Kinases (74 proteins across 2 families) · Phylogenetic Tree · Data Heatmap

Genome total 74Database total 12 517 906Click counts to filter the genome gene list
Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Histidine Kinases74

Open only the HK proteins for this genome in the gene list below.

HK families2 entries
Classic71 · 95,9%Hybrid3 · 4,1%

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

RR79proteins in this genome

P2CS Predicted Response Regulators

P2CS Predicted Response Regulators (79 proteins across 7 families) · Phylogenetic Tree · Data Heatmap

Genome total 79Database total 12 774 395Click counts to filter the genome gene list
Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Response Regulators79

Open only the RR proteins for this genome in the gene list below.

RR families7 entries
OmpR38 · 48,1%unclassified27 · 34,2%LytTR5 · 6,3%CheY3 · 3,8%NarL3 · 3,8%RpfG2 · 2,5%PleD_VieA1 · 1,3%

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

PP8proteins in this genome

P2CS Predicted PP / Hpt Proteins

P2CS Predicted PP / Hpt Proteins (8 proteins across 2 families) · Phylogenetic Tree · Data Heatmap

Genome total 8Database total 371 352Click counts to filter the genome gene list
Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

PP / Hpt Proteins8

Open only the PP proteins for this genome in the gene list below.

PP families2 entries
HisKa6 · 75%HPt2 · 25%

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

P2CS shortcuts

Classic entry points plus a collapsible genome protein list at the end of the page

All genesHKRRCheAPPOrphanPairTriadPentad+
Genome proteins

Full genome protein list with the same filters, grouped contexts, and links to the browser or gene detail pages.

Open this section to load the genome protein list.

Selected gene

Inline mode is active

Choose a gene from the list above to display its details below the genome sheet.