P2CS-Web

Two-component systems, rebuilt for exploration

sulfur-oxidizing endosymbiont of Gigantopelta aegis

Bacteria · None · None · None · None · None

TCS census

Genome-level counts from the current P2CS annotation tables

All genes129Total predicted proteins linked to this genome record.
HK59Histidine kinase predictions in the genes table.
RR66Response regulator predictions in the genes table.
CheA3CheA-like kinase predictions in the genes table.
PP4Phosphatase predictions in the genes table.

Genome overview

Curated genome metadata from the imported catalog and Cheops-linked sources

Genome IDGCF_016097415Stable genome identifier used across P2CS views.
Taxon ID2794934NCBI taxonomic identifier linked to the imported genome catalog.
AssemblyASM1609741v1 · Scaffoldreference genome
Composition4,91 Mb · 40,0% GCGenome size and GC content when available in the catalog.
External recordsPRJNA224116 · SAMN16968445sulfur-oxidizing endosymbiont of Gigantopelta aegis
Taxonomy snapshotBacteria · None · None · None · None · NoneBacteria; None; None; None; None; None; None

genome_ANI

ANI and taxonomy consistency checks

Taxonomy checkInconclusive
Best-match statuslow-coverage
Best speciesPsychromonas arctica
Best type assemblyGCA_000482725.1
Best type categorytype
Best ANI86.57%
Best qcov0,1%
Best scov0,1%
Declared assemblyno-type
Declared categoryno-type

genome_checkM

Completeness and contamination estimates

Completeness100,0%
Contamination1,7%
Marker setBacteria

genome_genbank

Assembly and annotation metadata

Organism namesulfur-oxidizing endosymbiont of Gigantopelta aegis
Infraspecificstrain=Gae_SOB
WGS masterJAEHGE000000000.1
Version statuslatest
Release typeMajor
Genome representationFull
Sequence release2020-12-16
SubmitterHong Kong University of Science and Technology
Groupbacteria
Ungapped size4 876 637
Replicons0
Scaffolds11
Contigs11
Total genes0
Protein-coding0
Non-coding0

Genome circular map

Circos-like chromosome overview with gene and TCS coordinates

Genome annotation GFF not found for this genome.

TCS Organization

Click a count to filter the gene list below

OrphanPairTriadTetradPentadPentad+Not in context
52 (52 genes)29 (58 genes)1 (3 genes)0 (0 gene)0 (0 gene)0 (0 gene)16 (16 genes)

Not in context = predicted HK, RR, and PP genes missing from the TCS context database.

Gene distribution

Total proteins: 129

Distribution chart type
HK59proteins in this genome

P2CS Predicted Histidine Kinases

P2CS Predicted Histidine Kinases (59 proteins across 4 families) · Phylogenetic Tree · Data Heatmap

Genome total 59Database total 12 517 906Click counts to filter the genome gene list
Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Histidine Kinases59

Open only the HK proteins for this genome in the gene list below.

HK families4 entries
Classic37 · 62,7%Hybrid18 · 30,5%CheA3 · 5,1%Unorthodox1 · 1,7%

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

RR66proteins in this genome

P2CS Predicted Response Regulators

P2CS Predicted Response Regulators (66 proteins across 15 families) · Phylogenetic Tree · Data Heatmap

Genome total 66Database total 12 774 395Click counts to filter the genome gene list
Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Response Regulators66

Open only the RR proteins for this genome in the gene list below.

RR families15 entries
unclassified17 · 25,8%CheY13 · 19,7%OmpR8 · 12,1%NarL5 · 7,6%PleD5 · 7,6%NtrC4 · 6,1%PleD_VieA3 · 4,5%CheV2 · 3,0%FrzZ2 · 3,0%PrrA2 · 3,0%CheB1 · 1,5%CyC-C1 · 1,5%LytTR1 · 1,5%RpfG1 · 1,5%RsbU1 · 1,5%

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

PP4proteins in this genome

P2CS Predicted PP / Hpt Proteins

P2CS Predicted PP / Hpt Proteins (4 proteins across 2 families) · Phylogenetic Tree · Data Heatmap

Genome total 4Database total 371 352Click counts to filter the genome gene list
Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

PP / Hpt Proteins4

Open only the PP proteins for this genome in the gene list below.

PP families2 entries
HisKa2 · 50%HPt2 · 50%

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

P2CS shortcuts

Classic entry points plus a collapsible genome protein list at the end of the page

All genesHKRRCheAPPOrphanPairTriadPentad+
Genome proteins

Full genome protein list with the same filters, grouped contexts, and links to the browser or gene detail pages.

Open this section to load the genome protein list.

Selected gene

Inline mode is active

Choose a gene from the list above to display its details below the genome sheet.