P2CS-Web

Two-component systems, rebuilt for exploration

Paenibacillus thalictri

Bacteria · Bacillota · Bacilli · Bacillales · Paenibacillaceae · Paenibacillus

TCS census

Genome-level counts from the current P2CS annotation tables

All genes464Total predicted proteins linked to this genome record.
HK238Histidine kinase predictions in the genes table.
RR226Response regulator predictions in the genes table.
CheA2CheA-like kinase predictions in the genes table.
PP0Phosphatase predictions in the genes table.

Genome overview

Curated genome metadata from the imported catalog and Cheops-linked sources

Genome IDGCF_004307995Stable genome identifier used across P2CS views.
Taxon ID2527873NCBI taxonomic identifier linked to the imported genome catalog.
AssemblyASM430799v1 · Contigreference genome
Composition9,42 Mb · 51,0% GCGenome size and GC content when available in the catalog.
External recordsPRJNA224116 · SAMN10962218Paenibacillus thalictri
Taxonomy snapshotBacteria · Bacillota · Bacilli · Bacillales · Paenibacillaceae · PaenibacillusBacteria; Bacillati; Bacillota; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus

genome_ANI

ANI and taxonomy consistency checks

Taxonomy checkOK
Best-match statuslow-coverage
Best speciesPaenibacillus piri
Best type assemblyGCA_004354045.1
Best type categorytype
Best ANI84.59%
Best qcov2,0%
Best scov2,4%
Declared assemblysame
CommentAssembly is the type-strain, no match is expected

genome_checkM

Completeness and contamination estimates

Completeness98,6%
Contamination0,9%
Marker setPaenibacillus

genome_genbank

Assembly and annotation metadata

Organism namePaenibacillus thalictri
Infraspecificstrain=N2SHLJ1
WGS masterSIRE00000000.1
Version statuslatest
Release typeMajor
Genome representationFull
Sequence release2019-02-27
SubmitterResearch Center for Medicine & Biology
Type materialassembly from type material
Groupbacteria
Ungapped size9 419 252
Replicons0
Scaffolds82
Contigs82
Annotation providerNCBI
Annotation nameNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation date2019-02-22
Total genes7981
Protein-coding7737
Non-coding114

Genome circular map

Circos-like chromosome overview with gene and TCS coordinates

Genome annotation GFF not found for this genome.

TCS Organization

Click a count to filter the gene list below

OrphanPairTriadTetradPentadPentad+Not in context
78 (78 genes)178 (356 genes)5 (15 genes)0 (0 gene)0 (0 gene)0 (0 gene)15 (15 genes)

Not in context = predicted HK, RR, and PP genes missing from the TCS context database.

Gene distribution

Total proteins: 464

Distribution chart type
HK238proteins in this genome

P2CS Predicted Histidine Kinases

P2CS Predicted Histidine Kinases (238 proteins across 4 families) · Phylogenetic Tree · Data Heatmap

Genome total 238Database total 12 517 906Click counts to filter the genome gene list
Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Histidine Kinases238

Open only the HK proteins for this genome in the gene list below.

HK families4 entries
Classic215 · 90,3%Hybrid19 · 8,0%CheA2 · 0,8%Unorthodox2 · 0,8%

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

RR226proteins in this genome

P2CS Predicted Response Regulators

P2CS Predicted Response Regulators (226 proteins across 11 families) · Phylogenetic Tree · Data Heatmap

Genome total 226Database total 12 774 395Click counts to filter the genome gene list
Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Response Regulators226

Open only the RR proteins for this genome in the gene list below.

RR families11 entries
unclassified140 · 61,9%OmpR45 · 19,9%NarL17 · 7,5%CheY11 · 4,9%SarP5 · 2,2%CheB2 · 0,9%PleD2 · 0,9%NtrC1 · 0,4%PleD_VieA1 · 0,4%RpfG1 · 0,4%Spo0A1 · 0,4%

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

PP0proteins in this genome

P2CS Predicted PP / Hpt Proteins

P2CS Predicted PP / Hpt Proteins (0 proteins across 0 families) · Phylogenetic Tree · Data Heatmap

Genome total 0Database total 0Click counts to filter the genome gene list
Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

No pp / hpt proteins were predicted for this genome.

P2CS shortcuts

Classic entry points plus a collapsible genome protein list at the end of the page

All genesHKRRCheAPPOrphanPairTriadPentad+
Genome proteins

Full genome protein list with the same filters, grouped contexts, and links to the browser or gene detail pages.

Open this section to load the genome protein list.

Selected gene

Inline mode is active

Choose a gene from the list above to display its details below the genome sheet.