P2CS-Web

Archangium gephyra

Bacteria · Myxococcota · Myxococcia · Myxococcales · Archangiaceae · Archangium

Strain: DSM 2261

TCS census

Genome-level counts from the current P2CS annotation tables

All genes473Total predicted proteins linked to this genome record.

HK307Histidine kinase predictions in the genes table.

RR161Response regulator predictions in the genes table.

CheA11CheA-like kinase predictions in the genes table.

PP5Phosphatase predictions in the genes table.

Genome overview

Curated genome metadata from the imported catalog and Cheops-linked sources

Genome IDGCF_003387095Stable genome identifier used across P2CS views.

Genome nameArchangium gephyraNCBI organism name imported through the genome catalogue.

Strain / isolateDSM 2261Infraspecific name when supplied by the source assembly metadata.

Taxon ID48NCBI taxonomic identifier linked to the imported genome catalog.

AssemblyASM338709v1 · ScaffoldNo RefSeq category available for this record.

Composition12,43 Mb · 69,5% GCGenome size and GC content when available in the catalog.

External recordsPRJNA224116 · SAMN04488083Archangium gephyra

Taxonomy snapshotBacteria · Myxococcota · Myxococcia · Myxococcales · Archangiaceae · ArchangiumUnknown

genome_ANI

ANI and taxonomy consistency checks

Taxonomy checkOK

Best-match statusspecies-match

Best speciesArchangium gephyra

Best type assemblyGCA_001027285.1

Best type categorysuspected-type

Best ANI99.98%

Best qcov99,9%

Best scov99,3%

Declared assemblyGCA_001027285.1

Declared organismArchangium gephyra

Declared categorysuspected-type

Declared ANI99.98%

genome_checkM

Completeness and contamination estimates

Completeness98,7%

Contamination4,0%

Marker setMyxococcales

genome_genbank

Assembly and annotation metadata

Organism nameArchangium gephyra

Infraspecificstrain=DSM 2261

WGS masterQUMU00000000.1

Version statuslatest

Release typeMajor

Genome representationFull

Sequence release2018-08-14

SubmitterDOE Joint Genome Institute

Type materialassembly from type material

Groupbacteria

Ungapped size12 412 389

Replicons0

Scaffolds60

Contigs60

Annotation providerDOE Joint Genome Institute

Annotation nameAnnotation submitted by DOE Joint Genome Institute

Annotation date2018-08-14

Total genes9930

Protein-coding9773

Non-coding92

Genome circular map

Circos-like overview of the selected replicon with central GC, strand-specific genes, zoomable coordinates, and TCS organization markers

GenomeGCF_003387095

RepliconNZ_QUMU01000001.1

Length1,23 Mb

Tracks938 genes · 46 TCS

Replicon

Zoom

Genes on + strand Genes on - strand HK RR CheA PP/Hpt GC% GC skew Cumulative GC skew Composition baseline

Context Orphan (26) Pair (3) Triad (2) Tetrad (0) Pentad (0) Pentad+ (0) Not in context (7)

Linear chromosome and composition views

Linear overview of the selected replicon, with strand-separated genes and composition plots aligned on the same genomic coordinate system.

Genes on + strand Genes on - strand HK RR CheA PP/Hpt

Sources

GFF: GCF_003387095.gff.gz · Sequence: GCF_003387095.1_ASM338709v1_genomic.fna.gz

TCS Organization

Click a count to filter the gene list below

Orphan	Pair	Triad	Tetrad	Pentad	Pentad+	Not in context
255 (255 genes)	55 (110 genes)	13 (39 genes)	3 (12 genes)	0 (0 gene)	0 (0 gene)	57 (57 genes)

Not in context = predicted HK, RR, and PP genes missing from the TCS context database.

Gene distribution

Total proteins: 473

HK307proteins in this genome

P2CS Predicted Histidine Kinases

P2CS Predicted Histidine Kinases (307 proteins across 3 families) · Phylogenetic Tree · Data Heatmap

Genome total 307Database total 12 517 906Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

RR161proteins in this genome

P2CS Predicted Response Regulators

P2CS Predicted Response Regulators (161 proteins across 15 families) · Phylogenetic Tree · Data Heatmap

Genome total 161Database total 12 774 395Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

PP5proteins in this genome

P2CS Predicted PP / Hpt Proteins

P2CS Predicted PP / Hpt Proteins (5 proteins across 2 families) · Phylogenetic Tree · Data Heatmap

Genome total 5Database total 371 352Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

P2CS shortcuts

Classic entry points plus a collapsible genome protein list at the end of the page

All genes HK RR CheA PP Orphan Pair Triad Pentad+

Genome proteins

Full genome protein list with the same filters, grouped contexts, and links to the browser or gene detail pages.

Open this section to load the genome protein list.

Selected gene

Inline mode is active

Choose a gene from the list above to display its details below the genome sheet.