P2CS-Web

Vitiosangium sp. GDMCC 1.1324

Bacteria · Myxococcota · Myxococcia · Myxococcales · Archangiaceae · Vitiosangium

Strain: GDMCC 1.1324

TCS census

Genome-level counts from the current P2CS annotation tables

All genes462Total predicted proteins linked to this genome record.

HK286Histidine kinase predictions in the genes table.

RR171Response regulator predictions in the genes table.

CheA12CheA-like kinase predictions in the genes table.

PP5Phosphatase predictions in the genes table.

Genome overview

Curated genome metadata from the imported catalog and Cheops-linked sources

Genome IDGCF_003044305Stable genome identifier used across P2CS views.

Genome nameVitiosangium sp. GDMCC 1.1324NCBI organism name imported through the genome catalogue.

Strain / isolateGDMCC 1.1324Infraspecific name when supplied by the source assembly metadata.

Taxon ID2138576NCBI taxonomic identifier linked to the imported genome catalog.

AssemblyASM304430v1 · ContigNo RefSeq category available for this record.

Composition14,08 Mb · 68,5% GCGenome size and GC content when available in the catalog.

External recordsPRJNA224116 · SAMN08798667Vitiosangium sp. GDMCC 1.1324

Taxonomy snapshotBacteria · Myxococcota · Myxococcia · Myxococcales · Archangiaceae · VitiosangiumUnknown

genome_ANI

ANI and taxonomy consistency checks

Taxonomy checkInconclusive

Best-match statusbelow-threshold-mismatch

Best speciesArchangium lansingense

Best type assemblyGCA_026626635.1

Best type categorytype

Best ANI87.24%

Best qcov51,7%

Best scov52,6%

Declared assemblyno-type

Declared categoryno-type

genome_checkM

Completeness and contamination estimates

Completeness98,9%

Contamination5,5%

Marker setMyxococcales

genome_genbank

Assembly and annotation metadata

Organism nameVitiosangium sp. GDMCC 1.1324

Infraspecificstrain=GDMCC 1.1324

WGS masterPZOX00000000.1

Version statuslatest

Release typeMajor

Genome representationFull

Sequence release2018-04-09

SubmitterGuangdong Institute of Microbiology

Groupbacteria

Ungapped size14 076 305

Replicons0

Scaffolds80

Contigs80

Annotation providerNCBI

Annotation nameNCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Annotation date2018-04-04

Total genes11592

Protein-coding11126

Non-coding85

Genome circular map

Circos-like overview of the selected replicon with central GC, strand-specific genes, zoomable coordinates, and TCS organization markers

GenomeGCF_003044305

RepliconNZ_PZOX01000001.1

Length1,15 Mb

Tracks877 genes · 31 TCS

Replicon

Zoom

Genes on + strand Genes on - strand HK RR CheA PP/Hpt GC% GC skew Cumulative GC skew Composition baseline

Context Orphan (15) Pair (6) Triad (0) Tetrad (0) Pentad (0) Pentad+ (0) Not in context (3)

Linear chromosome and composition views

Linear overview of the selected replicon, with strand-separated genes and composition plots aligned on the same genomic coordinate system.

Genes on + strand Genes on - strand HK RR CheA PP/Hpt

Sources

GFF: GCF_003044305.gff.gz · Sequence: GCF_003044305.1_ASM304430v1_genomic.gbff.gz

TCS Organization

Click a count to filter the gene list below

Orphan	Pair	Triad	Tetrad	Pentad	Pentad+	Not in context
226 (226 genes)	69 (138 genes)	12 (36 genes)	3 (12 genes)	1 (5 genes)	0 (0 gene)	45 (45 genes)

Not in context = predicted HK, RR, and PP genes missing from the TCS context database.

Gene distribution

Total proteins: 462

HK286proteins in this genome

P2CS Predicted Histidine Kinases

P2CS Predicted Histidine Kinases (286 proteins across 3 families) · Phylogenetic Tree · Data Heatmap

Genome total 286Database total 12 517 906Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

RR171proteins in this genome

P2CS Predicted Response Regulators

P2CS Predicted Response Regulators (171 proteins across 13 families) · Phylogenetic Tree · Data Heatmap

Genome total 171Database total 12 774 395Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

PP5proteins in this genome

P2CS Predicted PP / Hpt Proteins

P2CS Predicted PP / Hpt Proteins (5 proteins across 2 families) · Phylogenetic Tree · Data Heatmap

Genome total 5Database total 371 352Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

P2CS shortcuts

Classic entry points plus a collapsible genome protein list at the end of the page

All genes HK RR CheA PP Orphan Pair Triad Pentad+

Genome proteins

Full genome protein list with the same filters, grouped contexts, and links to the browser or gene detail pages.

Open this section to load the genome protein list.

Selected gene

Inline mode is active

Choose a gene from the list above to display its details below the genome sheet.