P2CS-Web

Two-component systems, rebuilt for exploration

Deinococcus pimensis DSM 21231

Bacteria · Deinococcota · Deinococci · Deinococcales · Deinococcaceae · Deinococcus

TCS census

Genome-level counts from the current P2CS annotation tables

All genes117Total predicted proteins linked to this genome record.
HK54Histidine kinase predictions in the genes table.
RR61Response regulator predictions in the genes table.
CheA0CheA-like kinase predictions in the genes table.
PP2Phosphatase predictions in the genes table.

Genome overview

Curated genome metadata from the imported catalog and Cheops-linked sources

Genome IDGCF_000519345Stable genome identifier used across P2CS views.
Taxon ID926554NCBI taxonomic identifier linked to the imported genome catalog.
AssemblyASM51934v1 · Scaffoldreference genome
Composition4,77 Mb · 70,0% GCGenome size and GC content when available in the catalog.
External recordsPRJNA224116 · SAMN02584908Deinococcus pimensis DSM 21231
Taxonomy snapshotBacteria · Deinococcota · Deinococci · Deinococcales · Deinococcaceae · DeinococcusBacteria; Thermotogati; Deinococcota; Deinococci; Deinococcales; Deinococcaceae; Deinococcus

genome_ANI

ANI and taxonomy consistency checks

Taxonomy checkOK
Best-match statuslow-coverage
Best speciesDeinococcus maricopensis
Best type assemblyGCA_000186385.1
Best type categorytype
Best ANI82.20%
Best qcov7,3%
Best scov9,8%
Declared assemblysame
CommentAssembly is the type-strain, no match is expected

genome_checkM

Completeness and contamination estimates

Completeness84,8%
Contamination2,0%
Marker setDeinococcus

genome_genbank

Assembly and annotation metadata

Organism nameDeinococcus pimensis DSM 21231
Infraspecificstrain=DSM 21231
WGS masterAZYF00000000.1
Version statuslatest
Release typeMajor
Genome representationFull
Sequence release2014-01-13
SubmitterDOE Joint Genome Institute
Type materialassembly from type material
Groupbacteria
Ungapped size4 676 406
Replicons0
Scaffolds67
Contigs961
Total genes0
Protein-coding0
Non-coding0

Genome circular map

Circos-like chromosome overview with gene and TCS coordinates

Genome annotation GFF not found for this genome.

TCS Organization

Click a count to filter the gene list below

OrphanPairTriadTetradPentadPentad+Not in context
67 (67 genes)16 (32 genes)3 (9 genes)0 (0 gene)0 (0 gene)0 (0 gene)9 (9 genes)

Not in context = predicted HK, RR, and PP genes missing from the TCS context database.

Gene distribution

Total proteins: 117

Distribution chart type
HK54proteins in this genome

P2CS Predicted Histidine Kinases

P2CS Predicted Histidine Kinases (54 proteins across 2 families) · Phylogenetic Tree · Data Heatmap

Genome total 54Database total 12 517 906Click counts to filter the genome gene list
Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Histidine Kinases54

Open only the HK proteins for this genome in the gene list below.

HK families2 entries
Classic50 · 92,6%Hybrid4 · 7,4%

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

RR61proteins in this genome

P2CS Predicted Response Regulators

P2CS Predicted Response Regulators (61 proteins across 5 families) · Phylogenetic Tree · Data Heatmap

Genome total 61Database total 12 774 395Click counts to filter the genome gene list
Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Response Regulators61

Open only the RR proteins for this genome in the gene list below.

RR families5 entries
CheY28 · 45,9%OmpR18 · 29,5%NarL11 · 18%unclassified3 · 4,9%PleD1 · 1,6%

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

PP2proteins in this genome

P2CS Predicted PP / Hpt Proteins

P2CS Predicted PP / Hpt Proteins (2 proteins across 2 families) · Phylogenetic Tree · Data Heatmap

Genome total 2Database total 371 352Click counts to filter the genome gene list
Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

PP / Hpt Proteins2

Open only the PP proteins for this genome in the gene list below.

PP families2 entries
HisKa1 · 50%HPt1 · 50%

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

P2CS shortcuts

Classic entry points plus a collapsible genome protein list at the end of the page

All genesHKRRCheAPPOrphanPairTriadPentad+
Genome proteins

Full genome protein list with the same filters, grouped contexts, and links to the browser or gene detail pages.

Open this section to load the genome protein list.

Selected gene

Inline mode is active

Choose a gene from the list above to display its details below the genome sheet.