P2CS-Web

Two-component systems, rebuilt for exploration

Methylobacterium sp. B34

None · None · None · None · None · None

TCS census

Genome-level counts from the current P2CS annotation tables

All genes212Total predicted proteins linked to this genome record.
HK104Histidine kinase predictions in the genes table.
RR100Response regulator predictions in the genes table.
CheA3CheA-like kinase predictions in the genes table.
PP8Phosphatase predictions in the genes table.

Genome overview

Curated genome metadata from the imported catalog and Cheops-linked sources

Genome IDGCF_000333475Stable genome identifier used across P2CS views.
Taxon ID-1NCBI taxonomic identifier linked to the imported genome catalog.
AssemblyN/ANo RefSeq category available for this record.
CompositionN/A · N/AGenome size and GC content when available in the catalog.
External recordsN/AMethylobacterium sp. B34
Taxonomy snapshotNone · None · None · None · None · NoneNone; None; None; None; None; None; None

genome_ANI

ANI and taxonomy consistency checks

Taxonomy checkOK
Best-match statusgenus-match
Best speciesMethylobacterium radiotolerans
Best type assemblyGCA_000019725.1
Best type categorytype
Best ANI93.75%
Best qcov72,7%
Best scov73,0%
Declared assemblyno-type
Declared categoryno-type
Excluded from RefSeqannotation fails completeness check

genome_checkM

Completeness and contamination estimates

Completeness85,9%
Contamination3,6%
Marker setMethylobacterium

genome_genbank

Assembly and annotation metadata

Organism nameMethylobacterium sp. B34
Infraspecificstrain=B34
WGS masterBADE00000000.1
Version statuslatest
Release typeMajor
Genome representationFull
Sequence release2013-01-10
SubmitterKazusa DNA Research Institute
Groupbacteria
Ungapped size6 926 575
Replicons0
Scaffolds1 622
Contigs1 622
Total genes0
Protein-coding0
Non-coding0

Genome circular map

Circos-like chromosome overview with gene and TCS coordinates

Genome annotation GFF not found for this genome.

TCS Organization

Click a count to filter the gene list below

OrphanPairTriadTetradPentadPentad+Not in context
0 (0 gene)0 (0 gene)0 (0 gene)0 (0 gene)0 (0 gene)0 (0 gene)212 (212 genes)

Not in context = predicted HK, RR, and PP genes missing from the TCS context database.

Gene distribution

Total proteins: 212

Distribution chart type
HK104proteins in this genome

P2CS Predicted Histidine Kinases

P2CS Predicted Histidine Kinases (104 proteins across 3 families) · Phylogenetic Tree · Data Heatmap

Genome total 104Database total 12 517 906Click counts to filter the genome gene list
Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Histidine Kinases104

Open only the HK proteins for this genome in the gene list below.

HK families3 entries
Classic69 · 66,3%Hybrid32 · 30,8%CheA3 · 2,9%

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

RR100proteins in this genome

P2CS Predicted Response Regulators

P2CS Predicted Response Regulators (100 proteins across 13 families) · Phylogenetic Tree · Data Heatmap

Genome total 100Database total 12 774 395Click counts to filter the genome gene list
Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Response Regulators100

Open only the RR proteins for this genome in the gene list below.

RR families13 entries
CheY42 · 42%OmpR20 · 20%unclassified13 · 13%NarL10 · 10%NtrC3 · 3,0%CheB2 · 2,0%CyC-C2 · 2,0%PleD2 · 2,0%PrrA2 · 2,0%AmiR_NasR1 · 1,0%CheV1 · 1,0%FrzZ1 · 1,0%RpfG1 · 1,0%

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

PP8proteins in this genome

P2CS Predicted PP / Hpt Proteins

P2CS Predicted PP / Hpt Proteins (8 proteins across 2 families) · Phylogenetic Tree · Data Heatmap

Genome total 8Database total 371 352Click counts to filter the genome gene list
Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

PP / Hpt Proteins8

Open only the PP proteins for this genome in the gene list below.

PP families2 entries
HisKa6 · 75%HPt2 · 25%

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

P2CS shortcuts

Classic entry points plus a collapsible genome protein list at the end of the page

All genesHKRRCheAPPOrphanPairTriadPentad+
Genome proteins

Full genome protein list with the same filters, grouped contexts, and links to the browser or gene detail pages.

Open this section to load the genome protein list.

Selected gene

Inline mode is active

Choose a gene from the list above to display its details below the genome sheet.