P2CS-Web

Two-component systems, rebuilt for exploration

Deinococcus peraridilitoris DSM 19664

Bacteria · Deinococcota · Deinococci · Deinococcales · Deinococcaceae · Deinococcus

TCS census

Genome-level counts from the current P2CS annotation tables

All genes112Total predicted proteins linked to this genome record.
HK55Histidine kinase predictions in the genes table.
RR57Response regulator predictions in the genes table.
CheA1CheA-like kinase predictions in the genes table.
PP0Phosphatase predictions in the genes table.

Genome overview

Curated genome metadata from the imported catalog and Cheops-linked sources

Genome IDGCF_000317835Stable genome identifier used across P2CS views.
Taxon ID937777NCBI taxonomic identifier linked to the imported genome catalog.
AssemblyASM31783v1 · Complete Genomereference genome
Composition4,51 Mb · 63,5% GCGenome size and GC content when available in the catalog.
External recordsPRJNA224116 · SAMN02261392Deinococcus peraridilitoris DSM 19664
Taxonomy snapshotBacteria · Deinococcota · Deinococci · Deinococcales · Deinococcaceae · DeinococcusBacteria; Thermotogati; Deinococcota; Deinococci; Deinococcales; Deinococcaceae; Deinococcus

genome_ANI

ANI and taxonomy consistency checks

Taxonomy checkOK
Best-match statuslow-coverage
Best speciesDeinococcus pimensis
Best type assemblyGCA_000519345.1
Best type categorytype
Best ANI82.64%
Best qcov3,8%
Best scov3,6%
Declared assemblysame
CommentAssembly is the type-strain, no match is expected

genome_checkM

Completeness and contamination estimates

Completeness99,8%
Contamination0,4%
Marker setDeinococcus

genome_genbank

Assembly and annotation metadata

Organism nameDeinococcus peraridilitoris DSM 19664
Infraspecificstrain=DSM 19664
Version statuslatest
Release typeMajor
Genome representationFull
Sequence release2012-12-10
SubmitterJGI
Type materialassembly from type material
Groupbacteria
Ungapped size4 513 714
Replicons3
Scaffolds3
Contigs3
Annotation providerJGI
Annotation nameAnnotation submitted by JGI
Annotation date2016-07-26
Total genes4466
Protein-coding4183
Non-coding63

Genome circular map

Circos-like chromosome overview with gene and TCS coordinates

Genome annotation GFF not found for this genome.

TCS Organization

Click a count to filter the gene list below

OrphanPairTriadTetradPentadPentad+Not in context
52 (52 genes)18 (36 genes)5 (15 genes)0 (0 gene)0 (0 gene)0 (0 gene)9 (9 genes)

Not in context = predicted HK, RR, and PP genes missing from the TCS context database.

Gene distribution

Total proteins: 112

Distribution chart type
HK55proteins in this genome

P2CS Predicted Histidine Kinases

P2CS Predicted Histidine Kinases (55 proteins across 3 families) · Phylogenetic Tree · Data Heatmap

Genome total 55Database total 12 517 906Click counts to filter the genome gene list
Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Histidine Kinases55

Open only the HK proteins for this genome in the gene list below.

HK families3 entries
Classic50 · 90,9%Hybrid4 · 7,3%CheA1 · 1,8%

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

RR57proteins in this genome

P2CS Predicted Response Regulators

P2CS Predicted Response Regulators (57 proteins across 5 families) · Phylogenetic Tree · Data Heatmap

Genome total 57Database total 12 774 395Click counts to filter the genome gene list
Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Response Regulators57

Open only the RR proteins for this genome in the gene list below.

RR families5 entries
CheY35 · 61,4%OmpR13 · 22,8%NarL4 · 7,0%unclassified4 · 7,0%PleD1 · 1,8%

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

PP0proteins in this genome

P2CS Predicted PP / Hpt Proteins

P2CS Predicted PP / Hpt Proteins (0 proteins across 0 families) · Phylogenetic Tree · Data Heatmap

Genome total 0Database total 0Click counts to filter the genome gene list
Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

No pp / hpt proteins were predicted for this genome.

P2CS shortcuts

Classic entry points plus a collapsible genome protein list at the end of the page

All genesHKRRCheAPPOrphanPairTriadPentad+
Genome proteins

Full genome protein list with the same filters, grouped contexts, and links to the browser or gene detail pages.

Open this section to load the genome protein list.

Selected gene

Inline mode is active

Choose a gene from the list above to display its details below the genome sheet.