P2CS-Web

Two-component systems, rebuilt for exploration

Francisella tularensis subsp. holarctica LVS

Bacteria · Pseudomonadota · Gammaproteobacteria · Thiotrichales · Francisellaceae · Francisella

TCS census

Genome-level counts from the current P2CS annotation tables

All genes2Total predicted proteins linked to this genome record.
HK1Histidine kinase predictions in the genes table.
RR1Response regulator predictions in the genes table.
CheA0CheA-like kinase predictions in the genes table.
PP0Phosphatase predictions in the genes table.

Genome overview

Curated genome metadata from the imported catalog and Cheops-linked sources

Genome IDGCF_000009245Stable genome identifier used across P2CS views.
Taxon ID376619NCBI taxonomic identifier linked to the imported genome catalog.
AssemblyASM924v1 · Complete GenomeNo RefSeq category available for this record.
Composition1,90 Mb · 32,0% GCGenome size and GC content when available in the catalog.
External recordsPRJNA224116 · SAMEA3138197Francisella tularensis subsp. holarctica LVS
Taxonomy snapshotBacteria · Pseudomonadota · Gammaproteobacteria · Thiotrichales · Francisellaceae · FrancisellaBacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella

genome_ANI

ANI and taxonomy consistency checks

Taxonomy checkOK
Best-match statusderived-species-match
Best speciesFrancisella tularensis
Best type assemblyGCA_000153845.1
Best type categorytype
Best ANI99.90%
Best qcov96,8%
Best scov97,3%
Declared assemblyGCA_000153845.1
Declared organismFrancisella tularensis subsp. holarctica 257
Declared categorytype
Declared ANI99.90%

genome_checkM

Completeness and contamination estimates

Completeness98,5%
Contamination0,0%
Marker setFrancisella tularensis

genome_genbank

Assembly and annotation metadata

Organism nameFrancisella tularensis subsp. holarctica LVS
Infraspecificstrain=LVS
Version statuslatest
Release typeMajor
Genome representationFull
Sequence release2006-03-02
SubmitterLarimer F.W., Genome Analysis Group, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
Groupbacteria
Ungapped size1 895 994
Replicons1
Scaffolds1
Contigs1
Annotation providerLarimer F.W., Genome Analysis Group, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
Annotation nameAnnotation submitted by Larimer F.W., Genome Analysis Group, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
Annotation date2015-02-28
Total genes2019
Protein-coding1754
Non-coding52

Genome circular map

Circos-like chromosome overview with gene and TCS coordinates

Genome annotation GFF not found for this genome.

TCS Organization

Click a count to filter the gene list below

OrphanPairTriadTetradPentadPentad+Not in context
2 (2 genes)0 (0 gene)0 (0 gene)0 (0 gene)0 (0 gene)0 (0 gene)0 (0 gene)

Not in context = predicted HK, RR, and PP genes missing from the TCS context database.

Gene distribution

Total proteins: 2

Distribution chart type
HK1proteins in this genome

P2CS Predicted Histidine Kinases

P2CS Predicted Histidine Kinases (1 proteins across 1 families) · Phylogenetic Tree · Data Heatmap

Genome total 1Database total 12 517 906Click counts to filter the genome gene list
Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Histidine Kinases1

Open only the HK proteins for this genome in the gene list below.

HK families1 entries
Classic1 · 100%

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

RR1proteins in this genome

P2CS Predicted Response Regulators

P2CS Predicted Response Regulators (1 proteins across 1 families) · Phylogenetic Tree · Data Heatmap

Genome total 1Database total 12 774 395Click counts to filter the genome gene list
Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Response Regulators1

Open only the RR proteins for this genome in the gene list below.

RR families1 entries
OmpR1 · 100%

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

PP0proteins in this genome

P2CS Predicted PP / Hpt Proteins

P2CS Predicted PP / Hpt Proteins (0 proteins across 0 families) · Phylogenetic Tree · Data Heatmap

Genome total 0Database total 0Click counts to filter the genome gene list
Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

No pp / hpt proteins were predicted for this genome.

P2CS shortcuts

Classic entry points plus a collapsible genome protein list at the end of the page

All genesHKRRCheAPPOrphanPairTriadPentad+
Genome proteins

Full genome protein list with the same filters, grouped contexts, and links to the browser or gene detail pages.

Open this section to load the genome protein list.

Selected gene

Inline mode is active

Choose a gene from the list above to display its details below the genome sheet.