P2CS-Web
Two-component systems, rebuilt for exploration
Clostridioides difficile QCD-66c26
Bacteria · Bacillota · Clostridia · Peptostreptococcales · Peptostreptococcaceae · Clostridioides
Strain: QCD-66c26
TCS census
Genome-level counts from the current P2CS annotation tables
Genome overview
Curated genome metadata from the imported catalog and Cheops-linked sources
Genome overview
Curated genome metadata from the imported catalog and Cheops-linked sources
Genome circular map
Circos-like overview of the selected replicon with central GC, strand-specific genes, zoomable coordinates, and TCS organization markers
Genome circular map
Circos-like overview of the selected replicon with central GC, strand-specific genes, zoomable coordinates, and TCS organization markers
Linear chromosome and composition views
Linear overview of the selected replicon, with strand-separated genes and composition plots aligned on the same genomic coordinate system.
GFF: GCF_000003215.gff.gz · Sequence: GCF_000003215.1_ASM321v1_genomic.fna.gz
TCS Organization
Click a count to filter the gene list below
| Orphan | Pair | Triad | Tetrad | Pentad | Pentad+ | Not in context |
|---|---|---|---|---|---|---|
| 22 (22 genes) | 37 (74 genes) | 0 (0 gene) | 0 (0 gene) | 1 (5 genes) | 0 (0 gene) | 5 (5 genes) |
Not in context = predicted HK, RR, and PP genes missing from the TCS context database.
Gene distribution
Total proteins: 106
P2CS Predicted Histidine Kinases
P2CS Predicted Histidine Kinases (50 proteins across 2 families) · Phylogenetic Tree · Data Heatmap
Family distributionGenome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.
Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.
Family composition
Pie, bar, or treemap view for the current genome.
Genome vs database radar
Percent of each family in this genome compared with the whole P2CS database.
P2CS Predicted Response Regulators
P2CS Predicted Response Regulators (56 proteins across 9 families) · Phylogenetic Tree · Data Heatmap
Family distributionGenome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.
Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.
Family composition
Pie, bar, or treemap view for the current genome.
Genome vs database radar
Percent of each family in this genome compared with the whole P2CS database.
P2CS Predicted PP / Hpt Proteins
P2CS Predicted PP / Hpt Proteins (0 proteins across 0 families) · Phylogenetic Tree · Data Heatmap
Family distributionGenome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.
Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.
No pp / hpt proteins were predicted for this genome.
P2CS shortcuts
Classic entry points plus a collapsible genome protein list at the end of the page
Genome proteinsFull genome protein list with the same filters, grouped contexts, and links to the browser or gene detail pages.
Full genome protein list with the same filters, grouped contexts, and links to the browser or gene detail pages.
Open this section to load the genome protein list.
Selected gene
Inline mode is active
Choose a gene from the list above to display its details below the genome sheet.