1 Response_reg#1
6-117 aa · 112 aa · 48.3% of protein
Raw token
Response_reg:6:9.62e-34:117:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFY5W_RS13090
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_964271915
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_964271915#ACFY5W_RS13090Stable P2CS identifier used across views.
GenomeGCF_964271915Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 232 aa (81.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-231 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:155:3.43e-32:231:77:77- Raw architecture: Response_reg:6:9.62e-34:117:112:111#Trans_reg_C:155:3.43e-32:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_964271915::NZ_OZ186706.1::G00037
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2657097-2657795Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_964271915::NZ_OZ186706.1::G00037Context members
ACFY5W_RS13090
Partner locus tags
ACFY5W_RS13090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_039959868.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4VF26Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4VF26_MEDGNDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFY5W_RS13090Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_OZ186706.1Sequence record reported by the local genomic context database.
Genomic interval2 657 097-2 657 795 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 657 097-2 657 795 ntGCF_964271915::NZ_OZ186706.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_964271915::NZ_OZ186706.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_OZ186706.1All displayed genes belong to this local TCS context.
Neighborhood span2 657 097-2 657 795 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 657 097 nt2 657 795 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACFY5W_RS13090GCF_964271915#ACFY5W_RS13090
RROmpRCurrent focus
2 657 097-2 657 795 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS11575Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1119881
Simplified PFAM architecture for RROC_1119881
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-117] | Trans_reg_C[157-231]
- Domain count: 2
- Matched identifier: RROC_1119881
- Positioned domains: Response_reg 6-117 ; Response_reg 6-117 ; Trans_reg_C 157-231 ; Trans_reg_C 157-231
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS11575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_964271915
AssemblyLUMC_Rgna_QRD028 · Complete Genomehaploid
Genome composition3 315 330 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 85 · HK 41 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key