1 Response_reg#1
4-113 aa · 110 aa · 45.6% of protein
Raw token
Response_reg:4:0.00000000000000125:113:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFY5W_RS01705
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_964271915
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_964271915#ACFY5W_RS01705Stable P2CS identifier used across views.
GenomeGCF_964271915Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage201 / 241 aa (83.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-231 aa · 91 aa · 37.8% of protein
Raw token
LytTR:141:2.38e-18:231:96:98- Raw architecture: Response_reg:4:0.00000000000000125:113:112:111#LytTR:141:2.38e-18:231:96:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_964271915::NZ_OZ186706.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span360491-361216Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_964271915::NZ_OZ186706.1::G00007Context members
ACFY5W_RS01705
Partner locus tags
ACFY5W_RS01705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004611696.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFY5W_RS01705Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_OZ186706.1Sequence record reported by the local genomic context database.
Genomic interval360 491-361 216 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span360 491-361 216 ntGCF_964271915::NZ_OZ186706.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_964271915::NZ_OZ186706.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_OZ186706.1All displayed genes belong to this local TCS context.
Neighborhood span360 491-361 216 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
360 491 nt361 216 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACFY5W_RS01705GCF_964271915#ACFY5W_RS01705
RRLytTRCurrent focus
360 491-361 216 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_964271915#ACFY5W_RS01705The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0881913
Simplified PFAM architecture for RROC_0881913
PFAM domain coverage: 202 / 241 aa (83.8%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-115] | LytTR[141-230]
- Domain count: 2
- Matched identifier: RROC_0881913
- Positioned domains: Response_reg 4-115 ; LytTR 141-230
Cluster members and taxonomy
Representative gene: GCF_964271915#ACFY5W_RS01705
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_964271915
AssemblyLUMC_Rgna_QRD028 · Complete Genomehaploid
Genome composition3 315 330 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 85 · HK 41 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key