1 Response_reg#1
6-117 aa · 112 aa · 69.1% of protein
Raw token
Response_reg:6:0.00000000999:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFY5W_RS01635
Response regulator, CheY family
Mediterraneibacter gnavus · GCF_964271915
ClassRRTypeCheYLength162 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_964271915#ACFY5W_RS01635Stable P2CS identifier used across views.
GenomeGCF_964271915Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length162 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 162 aa (69.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa162 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:0.00000000999:117:114:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_964271915::NZ_OZ186706.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span345123-345611Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_964271915::NZ_OZ186706.1::G00006Context members
ACFY5W_RS01635
Partner locus tags
ACFY5W_RS01635
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_379690607.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFY5W_RS01635Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_OZ186706.1Sequence record reported by the local genomic context database.
Genomic interval345 123-345 611 nt489 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span345 123-345 611 ntGCF_964271915::NZ_OZ186706.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_964271915::NZ_OZ186706.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_OZ186706.1All displayed genes belong to this local TCS context.
Neighborhood span345 123-345 611 nt489 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
345 123 nt345 611 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACFY5W_RS01635GCF_964271915#ACFY5W_RS01635
RRCheYCurrent focus
345 123-345 611 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_964271915#ACFY5W_RS01635The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2206664
Simplified PFAM architecture for RROC_2206664
PFAM domain coverage: 89 / 162 aa (54.9%)
1 aa162 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[28-116]
- Domain count: 1
- Matched identifier: RROC_2206664
- Positioned domains: Response_reg 28-116
Cluster members and taxonomy
Representative gene: GCF_964271915#ACFY5W_RS01635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_964271915
AssemblyLUMC_Rgna_QRD028 · Complete Genomehaploid
Genome composition3 315 330 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 85 · HK 41 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key