1 Response_reg#1
11-124 aa · 114 aa · 49.4% of protein
Raw token
Response_reg:11:3.27e-16:124:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACEXOJ_RS03885
Response regulator NarL family
Bifidobacterium longum · GCF_964260105
ClassRRTypeNarLLength231 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_964260105#ACEXOJ_RS03885Stable P2CS identifier used across views.
GenomeGCF_964260105Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 231 aa (74.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
168-225 aa · 58 aa · 25.1% of protein
Raw token
HTH_LUXR:168:4.55e-26:225:58:58- Raw architecture: Response_reg:11:3.27e-16:124:114:111#HTH_LUXR:168:4.55e-26:225:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_964260105::NZ_CAXVLX010000002.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span383777-384472Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_964260105::NZ_CAXVLX010000002.1::G00008Context members
ACEXOJ_RS03885
Partner locus tags
ACEXOJ_RS03885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_007053833.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACEXOJ_RS03885Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAXVLX010000002.1Sequence record reported by the local genomic context database.
Genomic interval383 777-384 472 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span383 777-384 472 ntGCF_964260105::NZ_CAXVLX010000002.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_964260105::NZ_CAXVLX010000002.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAXVLX010000002.1All displayed genes belong to this local TCS context.
Neighborhood span383 777-384 472 nt696 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
383 777 nt384 472 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACEXOJ_RS03885GCF_964260105#ACEXOJ_RS03885
RRNarLCurrent focus
383 777-384 472 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003135#HMPREF0175_RS06470Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1157707
Simplified PFAM architecture for RROC_1157707
PFAM domain coverage: 169 / 231 aa (73.2%)
1 aa231 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[11-123] | GerE[170-225]
- Domain count: 2
- Matched identifier: RROC_1157707
- Positioned domains: Response_reg 11-123 ; Response_reg 11-123 ; GerE 170-225 ; GerE 170-225
Cluster members and taxonomy
Representative gene: GCF_000003135#HMPREF0175_RS06470
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 22 over 22 total members. Page 1 / 1.
GCF_000003135#HMPREF0175_RS06470 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_964260105
AssemblyCC01377 · Contighaploid
Genome composition2 373 572 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 20 · HK 10 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key