1 SBP_bac_3#1
44-260 aa · 217 aa · 26.0% of protein
Raw token
SBP_bac_3:44:1.9e-32:260:227:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACESXD_RS00355
Histidine kinase, Classic
Anaerostipes hadrus · GCF_964251635
ClassHKTypeClassicLength836 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_964251635#ACESXD_RS00355Stable P2CS identifier used across views.
GenomeGCF_964251635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_c
Protein length836 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage610 / 836 aa (73.0%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa836 aa
Domain-by-domain annotation4 items
2 SBP_bac_3#2
282-486 aa · 205 aa · 24.5% of protein
Raw token
SBP_bac_3:282:0.000000000000109:486:220:2243 HisKA#3
571-639 aa · 69 aa · 8.3% of protein
Raw token
HisKA:571:1.62e-18:639:69:644 HATPase_c#4
685-803 aa · 119 aa · 14.2% of protein
Raw token
HATPase_c:685:2.75e-30:803:119:109- Raw architecture: SBP_bac_3:44:1.9e-32:260:227:224#SBP_bac_3:282:0.000000000000109:486:220:224#HisKA:571:1.62e-18:639:69:64#HATPase_c:685:2.75e-30:803:119:109
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_964251635::NZ_CAXUKL010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span80550-83467Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_964251635::NZ_CAXUKL010000001.1::G00002Context members
ACESXD_RS00350ACESXD_RS00355
Partner locus tags
ACESXD_RS00350ACESXD_RS00355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118352326.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACESXD_RS00355Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CAXUKL010000001.1Sequence record reported by the local genomic context database.
Genomic interval80 957-83 467 nt2 511 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span80 550-83 467 ntGCF_964251635::NZ_CAXUKL010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_964251635::NZ_CAXUKL010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CAXUKL010000001.1All displayed genes belong to this local TCS context.
Neighborhood span80 550-83 467 nt2 918 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 550 nt83 467 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACESXD_RS00350GCF_964251635#ACESXD_RS00350
RRCheY
80 550-80 978 nt · Reverse (-)
ACESXD_RS00355GCF_964251635#ACESXD_RS00355
HKClassicCurrent focus
80 957-83 467 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008416325#F2Y14_RS00395Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0512612
Simplified PFAM architecture for HKOC_0512612
PFAM domain coverage: 401 / 836 aa (48.0%)
1 aa836 aa
SBP_bac_3HisKAHATPase_c
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c
- Raw architecture: SBP_bac_3[45-260] | HisKA[571-639] | HATPase_c[686-801]
- Domain count: 3
- Matched identifier: HKOC_0512612
- Positioned domains: SBP_bac_3 45-260 ; HisKA 571-639 ; HATPase_c 686-801
Cluster members and taxonomy
Representative gene: GCF_008416325#F2Y14_RS00395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_964251635
AssemblyCC00945 · Scaffoldhaploid
Genome composition2 984 779 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 47 · HK 23 · RR 22CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key